AT2G46980

meiotic cell cycle

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19299492 .. 19304271
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46980.2

Sequence Viewer

Length: 1551 bp
ATGAGCGACTATAGAAGCTTCGGCAGTAACTACCATCCATCAAGTCAATCTAGAAAGATTTCTATAGGAGTTATGGCTGATTCACAACCGAAAAGGAATCTTGTGCCAGATAAGGATGATGGAGATGTTATTGCTAGAGTAGAAAAGTTGAAATCAGCCACCGTAACTGAATTACAGGCGAACAAGAAAGAGAAAAGTGATTTAGCTGCCAAGCAAAGGAATTCAGCTCAGGTCACAGGACATGTGACCTCACCTTGGAGGTCTCCGAGATCGTCTCATCGGAAATTAGGGACTCTTGAGAGTGTTCTTTGTAAGCAAACATCTAGTTTGTCTGGTAGCAAAGGATTAAACAAGGGACTTAATGGAGCACATCAGACACCAGCTCGTGAATCATTTCAAAACTGTCCCATTTCGAGTCCTCAGCACAGTCTTGGTGAGCTGAATGGTGGCAGGAACGATAGAGTGATGGATAGGAGTCCAGAGAGGATGGAAGAACCTCCATCTGCAGTCTTGCAGCAAAAGGTTGCCTCACAGAGAGAGAAGATGGATAAGCCAGGGAAGGAGACAAATGGAACTACTGATGTTTTGAGATCAAAACTGTGGGAGATATTGGGAAAAGCTTCACCAGCAAATAATGAAGATGTGAACTCTGAGACCCCAGAAGTTGAGAAGACCAACTTCAAGTTGAGTCAAGACAAGGGTTCAAATGATGATCCTCTTATTAAGCCTAGACACAATTCAGATTCTATCGAAACTGATTCTGAAAGCCCTGAAAATGCTACCAGAAGGCCAGTAACCAGATCTTTGTTGCAGAGGAGGGTAGGAGCCAAAGGTGTCCAGAAGAAAACCAAAGCTGGTGCCAACTTAGGTCGCAAGTGCACAGAACAAGTAAATAGTGTATTTTCTTTTGAGGAAGGTTTGCGCGGAAAAATTGGCACTGCTGTGAATTCCAGTGTTATGCCAAAGAAACAAAGGGGTAGAAGAAAAAACACTGTTGTAAAATGCCGTAAGGCTCATTCTCGAAAAAAGGATGAAGCTGATTGGAGTCGGAAGGAGGCGAGCAAGAGCAATACTCCACCACGTTCTGAAAGCACAGAAACTGGCAAAAGATCTTCATCTTCAGACAAAAAGGGAAGTTCCCATGACCTTCATCCACAGAGCAAAGCCCGGAAACAGAAACCAGATATTAGCACAAGGGAAGGAGATTTTCATCCATCGCCAGAAGCTGAGGCAGCAGCTCTGCCAGAGATGTCCCAGGGATTATCTAAAAATGGCGATAAACATGAACGGCCGAGTAATATTTTCAGGGAAAAGTCTGTTGAGCCAGAAAACGAATTCCAGAGTCCAACCTTTGGATATAAAGCACCAATCTCAAGTCCTTCCCCATGTTGTTCTCCAGAAGCATCTCCTTTGCAACCTAGGAATATTAGTCCCACATTAGATGAGACGGAAACACCAATATTTAGCTTCGGTACTAAGAAAACCTCTCAAGGGACAACAGGCCAAGCGTCAGATACAGAAAAGAGATTGCCTGTAACCTTCATAAACTGA

Protein Analysis

516

Amino Acids

56.67

Weight (kDa)

9.66

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASY3-like PF20435 1 - 793 0.0 Meiosis-specific protein ASY3-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 1352
AccII CGCG 1 cut(s) 924
AciI CCGC 1 cut(s) 924
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 1289
AcsI RAATTY 3 cut(s) 220, 946, 1334
AcuI CTGAAG 1 cut(s) 1104
AfaI GTAC 1 cut(s) 1474
AfiI CCNNNNNNNGG 4 cut(s) 216, 255, 1352, 1491
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 151, 398, 682, 705
AjnI CCWGG 2 cut(s) 553, 1254
AleI CACNNNNGTG 1 cut(s) 941
Alw21I GWGCWC 2 cut(s) 370, 881
Alw26I GTCTC 5 cut(s) 267, 279, 557, 647, 1439
Alw44I GTGCAC 1 cut(s) 877
AlwI GGATC 1 cut(s) 707
AlwNI CAGNNNCTG 2 cut(s) 1100, 1226
AoxI GGCC 3 cut(s) 788, 1289, 1501
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 4 cut(s) 206, 514, 1232, 1235
ApoI RAATTY 3 cut(s) 220, 946, 1334
Asp700I GAANNNNTTC 3 cut(s) 58, 393, 619
AspA2I CCTAGG 1 cut(s) 1418
AspLEI GCGC 1 cut(s) 924
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 3 cut(s) 243, 446, 615
AvrII CCTAGG 1 cut(s) 1418
BaeGI GKGCMC 1 cut(s) 881
BanI GGYRCC 1 cut(s) 857
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 2 cut(s) 370, 881
BbvCI CCTCAGC 2 cut(s) 420, 1227
BbvI GCAGC 4 cut(s) 193, 526, 1244, 1247
BccI CCATC 8 cut(s) 42, 46, 113, 460, 481, 508, 538, 1222
BceAI ACGGC 2 cut(s) 990, 1304
BciT130I CCWGG 2 cut(s) 555, 1256
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 5 cut(s) 267, 279, 557, 647, 1439
BfaI CTAG 5 cut(s) 51, 135, 324, 729, 1419
BfmI CTRYAG 3 cut(s) 10, 63, 504
BglII AGATCT 2 cut(s) 800, 1109
BisI GCNGC 4 cut(s) 207, 515, 1233, 1236
BlnI CCTAGG 1 cut(s) 1418
BlsI GCNGC 4 cut(s) 208, 516, 1234, 1237
Bme1390I CCNGG 3 cut(s) 555, 1168, 1256
BmiI GGNNCC 2 cut(s) 826, 859
BmrFI CCNGG 3 cut(s) 555, 1168, 1256
BmsI GCATC 1 cut(s) 1412
BpiI GAAGAC 1 cut(s) 677
BplI GAGNNNNNCTC 4 cut(s) 259, 291, 1057, 1089
BpmI CTGGAG 1 cut(s) 1380
Bpu10I CCTNAGC 3 cut(s) 228, 420, 1227
BpuEI CTTGAG 3 cut(s) 317, 1357, 1473
BpuMI CCSGG 1 cut(s) 1168
BsaBI GATNNNNATC 2 cut(s) 1114, 1209
BsaI GGTCTC 2 cut(s) 267, 647
BsaJI CCNNGG 5 cut(s) 254, 554, 1254, 1255, 1418
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 255, 1352, 1491
Bse1I ACTGG 3 cut(s) 791, 951, 1105
Bse8I GATNNNNATC 2 cut(s) 1114, 1209
BseBI CCWGG 2 cut(s) 555, 1256
BseDI CCNNGG 5 cut(s) 254, 554, 1254, 1255, 1418
BseGI GGATG 6 cut(s) 34, 121, 492, 1036, 1150, 1210
BseJI GATNNNNATC 2 cut(s) 1114, 1209
BseLI CCNNNNNNNGG 4 cut(s) 216, 255, 1352, 1491
BseMII CTCAG 4 cut(s) 242, 434, 642, 1218
BseNI ACTGG 3 cut(s) 791, 951, 1105
BseRI GAGGAG 1 cut(s) 829
BseSI GKGCMC 1 cut(s) 881
BseX3I CGGCCG 1 cut(s) 1289
BseXI GCAGC 4 cut(s) 193, 526, 1244, 1247
Bsh1236I CGCG 1 cut(s) 924
Bsh1285I CGRYCG 1 cut(s) 1292
BshFI GGCC 3 cut(s) 790, 1291, 1503
BshNI GGYRCC 1 cut(s) 857
BsiEI CGRYCG 1 cut(s) 1292
BsiHKAI GWGCWC 2 cut(s) 370, 881
BsiSI CCGG 1 cut(s) 1168
BslFI GGGAC 6 cut(s) 304, 369, 390, 1237, 1416, 1507
BslI CCNNNNNNNGG 4 cut(s) 216, 255, 1352, 1491
BsmAI GTCTC 5 cut(s) 267, 279, 557, 647, 1439
BsmBI CGTCTC 2 cut(s) 279, 1439
BsmFI GGGAC 6 cut(s) 304, 369, 390, 1237, 1416, 1507
BsnI GGCC 3 cut(s) 790, 1291, 1503
Bso31I GGTCTC 2 cut(s) 267, 647
Bsp1286I GDGCHC 2 cut(s) 370, 881
Bsp143I GATC 5 cut(s) 269, 590, 712, 800, 1109
BspACI CCGC 1 cut(s) 924
BspANI GGCC 3 cut(s) 790, 1291, 1503
BspCNI CTCAG 4 cut(s) 241, 433, 643, 1219
BspFNI CGCG 1 cut(s) 924
BspLI GGNNCC 2 cut(s) 826, 859
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 1 cut(s) 707
BspT107I GGYRCC 1 cut(s) 857
BspTNI GGTCTC 2 cut(s) 267, 647
BsrI ACTGG 3 cut(s) 791, 951, 1105
BssECI CCNNGG 5 cut(s) 254, 554, 1254, 1255, 1418
BssMI GATC 5 cut(s) 269, 590, 712, 800, 1109
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 254, 1418
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 555, 1256
Bst4CI ACNGT 5 cut(s) 163, 404, 428, 600, 994
BstC8I GCNNGC 1 cut(s) 1060
BstDEI CTNAG 6 cut(s) 228, 420, 651, 865, 1227, 1476
BstF5I GGATG 6 cut(s) 34, 121, 492, 1036, 1150, 1210
BstFNI CGCG 1 cut(s) 924
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 5 cut(s) 272, 593, 715, 803, 1112
BstMAI GTCTC 5 cut(s) 267, 279, 557, 647, 1439
BstMBI GATC 5 cut(s) 269, 590, 712, 800, 1109
BstMCI CGRYCG 1 cut(s) 1292
BstMWI GCNNNNNNNGC 2 cut(s) 626, 1232
BstNI CCWGG 2 cut(s) 555, 1256
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 553, 1166, 1254
BstSFI CTRYAG 3 cut(s) 10, 63, 504
BstSLI GKGCMC 1 cut(s) 881
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 4 cut(s) 193, 526, 1244, 1247
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 800, 1109
BstYI RGATCY 2 cut(s) 800, 1109
BstZI CGGCCG 1 cut(s) 1289
BsuRI GGCC 3 cut(s) 790, 1291, 1503
BtgZI GCGATG 1 cut(s) 1200
BtsCI GGATG 6 cut(s) 34, 121, 492, 1036, 1150, 1210
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 3 cut(s) 936, 958, 990
Cac8I GCNNGC 1 cut(s) 1060
CaiI CAGNNNCTG 2 cut(s) 1100, 1226
CfoI GCGC 1 cut(s) 924
CseI GACGC 1 cut(s) 1497
Csp6I GTAC 1 cut(s) 1473
CviAII CATG 4 cut(s) 242, 1142, 1283, 1386
CviQI GTAC 1 cut(s) 1473
DdeI CTNAG 6 cut(s) 228, 420, 651, 865, 1227, 1476
DpnI GATC 5 cut(s) 271, 592, 714, 802, 1111
DpnII GATC 5 cut(s) 269, 590, 712, 800, 1109
EaeI YGGCCR 1 cut(s) 1289
EagI CGGCCG 1 cut(s) 1289
EclXI CGGCCG 1 cut(s) 1289
Eco130I CCWWGG 2 cut(s) 254, 1418
Eco31I GGTCTC 2 cut(s) 267, 647
Eco52I CGGCCG 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 1104
EcoRI GAATTC 3 cut(s) 220, 946, 1334
EcoRII CCWGG 2 cut(s) 553, 1254
EcoT14I CCWWGG 2 cut(s) 254, 1418
ErhI CCWWGG 2 cut(s) 254, 1418
Esp3I CGTCTC 2 cut(s) 279, 1439
FaeI CATG 4 cut(s) 245, 1145, 1286, 1389
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FaqI GGGAC 6 cut(s) 304, 369, 390, 1237, 1416, 1507
FatI CATG 4 cut(s) 241, 1141, 1282, 1385
Fnu4HI GCNGC 4 cut(s) 207, 515, 1233, 1236
FokI GGATG 6 cut(s) 21, 128, 499, 1043, 1137, 1197
Fsp4HI GCNGC 4 cut(s) 207, 515, 1233, 1236
FspBI CTAG 5 cut(s) 51, 135, 324, 729, 1419
GlaI GCGC 1 cut(s) 923
GluI GCNGC 4 cut(s) 207, 515, 1233, 1236
GsuI CTGGAG 1 cut(s) 1380
HaeIII GGCC 3 cut(s) 790, 1291, 1503
HapII CCGG 1 cut(s) 1168
HgaI GACGC 1 cut(s) 1497
HhaI GCGC 1 cut(s) 924
Hin1II CATG 4 cut(s) 245, 1145, 1286, 1389
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HindIII AAGCTT 2 cut(s) 16, 618
HpaII CCGG 1 cut(s) 1168
HphI GGTGA 3 cut(s) 243, 446, 615
Hpy166II GTNNAC 2 cut(s) 646, 879
Hpy188III TCNNGA 9 cut(s) 51, 296, 386, 479, 692, 838, 1020, 1339, 1397
Hpy8I GTNNAC 2 cut(s) 646, 879
HpyAV CCTTC 8 cut(s) 553, 780, 908, 1045, 1157, 1193, 1389, 1549
HpyCH4III ACNGT 5 cut(s) 163, 404, 428, 600, 994
HpyCH4IV ACGT 1 cut(s) 1081
HpyCH4V TGCA 5 cut(s) 506, 514, 811, 879, 1414
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 1232
HpyF3I CTNAG 6 cut(s) 228, 420, 651, 865, 1227, 1476
HpySE526I ACGT 1 cut(s) 1081
Hsp92II CATG 4 cut(s) 245, 1145, 1286, 1389
HspAI GCGC 1 cut(s) 922
Kzo9I GATC 5 cut(s) 269, 590, 712, 800, 1109
LmnI GCTCC 2 cut(s) 365, 824
Lsp1109I GCAGC 4 cut(s) 193, 526, 1244, 1247
LweI GCATC 1 cut(s) 1412
MaeI CTAG 5 cut(s) 51, 135, 324, 729, 1419
MaeII ACGT 1 cut(s) 1081
MaeIII GTNAC 6 cut(s) 26, 163, 232, 244, 793, 1534
MalI GATC 5 cut(s) 271, 592, 714, 802, 1111
MboI GATC 5 cut(s) 269, 590, 712, 800, 1109
MboII GAAGA 8 cut(s) 503, 553, 650, 682, 853, 993, 1104, 1110
MflI RGATCY 2 cut(s) 800, 1109
MhlI GDGCHC 2 cut(s) 370, 881
MluCI AATT 7 cut(s) 170, 220, 284, 736, 930, 946, 1334
MlyI GAGTC 6 cut(s) 286, 424, 484, 697, 1054, 1351
MmeI TCCRAC 2 cut(s) 1028, 1370
MroXI GAANNNNTTC 3 cut(s) 58, 393, 619
MseI TTAA 3 cut(s) 347, 360, 723
MslI CAYNNNNRTG 1 cut(s) 941
MspI CCGG 1 cut(s) 1168
MspR9I CCNGG 3 cut(s) 555, 1168, 1256
MvaI CCWGG 2 cut(s) 555, 1256
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 2 cut(s) 626, 1232
NciI CCSGG 1 cut(s) 1168
NdeII GATC 5 cut(s) 269, 590, 712, 800, 1109
NlaIII CATG 4 cut(s) 245, 1145, 1286, 1389
NlaIV GGNNCC 2 cut(s) 826, 859
NmeAIII GCCGAG 1 cut(s) 1317
NmuCI GTSAC 2 cut(s) 232, 244
NspI RCATGY 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 941
PasI CCCWGGG 1 cut(s) 1255
PciI ACATGT 1 cut(s) 241
PdmI GAANNNNTTC 3 cut(s) 58, 393, 619
PfeI GAWTC 5 cut(s) 80, 97, 389, 743, 758
PflMI CCANNNNNTGG 1 cut(s) 1352
PkrI GCNGC 4 cut(s) 208, 516, 1234, 1237
PleI GAGTC 6 cut(s) 286, 423, 483, 696, 1053, 1350
PpsI GAGTC 6 cut(s) 286, 423, 483, 696, 1053, 1350
PscI ACATGT 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 553, 1254
PspGI CCWGG 2 cut(s) 553, 1254
PspN4I GGNNCC 2 cut(s) 826, 859
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 2 cut(s) 1100, 1226
PsuI RGATCY 2 cut(s) 800, 1109
RsaI GTAC 1 cut(s) 1474
RsaNI GTAC 1 cut(s) 1473
RseI CAYNNNNRTG 1 cut(s) 941
SaqAI TTAA 3 cut(s) 347, 360, 723
SatI GCNGC 4 cut(s) 207, 515, 1233, 1236
Sau3AI GATC 5 cut(s) 269, 590, 712, 800, 1109
SchI GAGTC 6 cut(s) 286, 424, 484, 697, 1054, 1351
ScrFI CCNGG 3 cut(s) 555, 1168, 1256
SduI GDGCHC 2 cut(s) 370, 881
SfaNI GCATC 1 cut(s) 1412
SfcI CTRYAG 3 cut(s) 10, 63, 504
SmiMI CAYNNNNRTG 1 cut(s) 941
SmlI CTYRAG 3 cut(s) 296, 1372, 1488
SmoI CTYRAG 3 cut(s) 296, 1372, 1488
Sse9I AATT 7 cut(s) 170, 220, 284, 736, 930, 946, 1334
SsiI CCGC 1 cut(s) 924
SspI AATATT 3 cut(s) 1300, 1426, 1461
SspMI CTAG 5 cut(s) 51, 135, 324, 729, 1419
StyD4I CCNGG 3 cut(s) 553, 1166, 1254
StyI CCWWGG 2 cut(s) 254, 1418
TaaI ACNGT 5 cut(s) 163, 404, 428, 600, 994
TaiI ACGT 1 cut(s) 1084
TaqI TCGA 3 cut(s) 413, 750, 1021
TasI AATT 7 cut(s) 170, 220, 284, 736, 930, 946, 1334
TfiI GAWTC 5 cut(s) 80, 97, 389, 743, 758
Tru1I TTAA 3 cut(s) 347, 360, 723
Tru9I TTAA 3 cut(s) 347, 360, 723
TscAI CASTG 3 cut(s) 943, 958, 997
TseFI GTSAC 2 cut(s) 232, 244
TseI GCWGC 4 cut(s) 206, 514, 1232, 1235
Tsp45I GTSAC 2 cut(s) 232, 244
TspDTI ATGAA 7 cut(s) 651, 1047, 1104, 1139, 1199, 1299, 1531
TspGWI ACGGA 1 cut(s) 1463
TspRI CASTG 3 cut(s) 943, 958, 997
Van91I CCANNNNNTGG 1 cut(s) 1352
VneI GTGCAC 1 cut(s) 877
XapI RAATTY 3 cut(s) 220, 946, 1334
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 1418
XmnI GAANNNNTTC 3 cut(s) 58, 393, 619
XspI CTAG 5 cut(s) 51, 135, 324, 729, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.