Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004178

Physical Location & Seq

Genomic Coordinates Reverse (-)

26249433 .. 26251951

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAGCTGCAAACCATTGAGTCTCAGATTCAAACAGACATAGGAAAGCATACAAACCTCAGTAAATCAAAGAAAAAAAGGCTGGAAACAAGGTTTGAAGAGCAACAAGAAAAACTGAAAGTGATTTATGACAAGTTCAAGGAACAAGTCAATCAGCATCTTCAGGAATGCAGGAGCACACTTGAAGGGCTGGAAGTATACCAGACAGAGTTTAAGGGAACTGTTGATAAGCAAAAAGCATCACACAGAAAGCTTCTCATGCAAGTGGAAGAAGCAATTGAGACCCAACTCAACGATGCCCAAAGAAAAATCCAAGTCACCCAAAGGATGGCGCGTGAAAAGATGCTCCAATTGAAACACGAACTGGCATTGTGTTTAAAAGACGGCATTCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0007049 GO:0008150 GO:0009987 GO:0010564 GO:0022414 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0040020 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051321 GO:0051445 GO:0051726 GO:0051783 GO:0051983 GO:0060629 GO:0060631 GO:0065007 GO:0070013 GO:0090173 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.58

Weight (kDa)

9.06

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT5G20995
fragaria_vesca	FvH4_1g26160 FvH4_1g26160 FvH4_4g08230
malus_domestica	MD09G1291300.v1.1 MD17G1286100.v1.1
prunus_persica	Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1
pyrus_communis	pycom09g19920 pycom17g28230
rosa_chinensis	RchiOBHm_Chr3g0485651
rosa_laevigata	RLG00000023137
rosa_multiflora	Rmu_co8410931.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396550
rosa_rugosa	Rorug03G0220500
rosa_samantha	Rh3AG269400 Rh3BG305200 Rh3CG303500 Rh3DG299700
rosa_wichuraiana	Rw3G024010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	32, 98, 139, 185, 355
AluBI	AGCT	2 cut(s)	7, 253
AluI	AGCT	2 cut(s)	7, 253
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	27, 275
ApeKI	GCWGC	2 cut(s)	4, 7
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	27, 275
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
BmsI	GCATC	4 cut(s)	166, 248, 286, 333
BsaI	GGTCTC	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	38, 73
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	27, 275
BsmI	GAATGC	2 cut(s)	173, 387
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	37, 72
BspFNI	CGCG	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	369
BssNAI	GTATAC	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	24, 59, 392
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	27, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	333
CfoI	GCGC	1 cut(s)	334
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	4 cut(s)	7, 82, 190, 253
CviKI_1	RGCY	4 cut(s)	7, 82, 190, 253
DdeI	CTNAG	3 cut(s)	24, 59, 392
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	146
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	41, 51, 129, 199, 260
FatI	CATG	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	5, 8
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	5, 8
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	5, 8
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	20, 28
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	4, 10, 171, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	3 cut(s)	24, 59, 392
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	332
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	174, 351
LpnPI	CCDG	6 cut(s)	68, 149, 157, 176, 215, 350
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	4 cut(s)	166, 248, 286, 333
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	110, 152, 281
MfeI	CAATTG	2 cut(s)	276, 350
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	276, 350
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	213, 377
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	7
MunI	CAATTG	2 cut(s)	276, 350
Mva1269I	GAATGC	2 cut(s)	173, 387
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	93
PctI	GAATGC	2 cut(s)	173, 387
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	6, 9
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	213, 377
SatI	GCNGC	2 cut(s)	5, 8
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	4 cut(s)	9, 60, 95, 255
SfaNI	GCATC	4 cut(s)	166, 248, 286, 333
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	276, 350
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	2 cut(s)	276, 350
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	213, 377
Tru9I	TTAA	2 cut(s)	213, 377
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	4, 7
Tsp45I	GTSAC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.