Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004178

Physical Location & Seq

Genomic Coordinates Forward (+)

20746546 .. 20753151

Gene Structure 6606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGAAGCTACAGATAGCCCAATATCGAAACCCAATCGACCCAACGGACCTATATCCAAGATGGGCAGGGGTACTATCAGCCCGTCAGGCGCCAGGAGAAAAACTCACATGTATTTCCCGCCGTGTATTTTCATACATTTTTCATTGTTCTGCGTCTCTCTCTCTGATTCACCGTCGGCAAAAAAATTGGATTGTGAAAGTTGAAAGCTGGAGGTCATCGATCATCAACGCTCAACAAGCAGTCACAGCTGCAGTTTTGCTGCTTCTTTGTTCTCAAACAATGGAGGTGGATTCACTGCAATACTTACGGGATGACCAAACAAGCAATTGTAGGAGTTTTGGAAGCATTAATCATCCATTTAGCCAATCGAGAAAGATATCGATTGGAGTTGTGGTAGACCCATCAACCAAGAAAAAGTCTGGAGTCACCAAGGTAGGTGAACCTGTGGTGCCAAATGCAGAAAGGGGAACATCTAATTTAGGCAATACCACGGAGGAAATAAGCAAGGAGCAAGATGTCACAGCTGCCAAGAAAATAAAACAAGCTAGGGATCCAGAGCAGGTGAATTCCCAATGGGTTAGTACTGCATCATTCCACGAGAAAATGCGTACTTCAGATCCCCCTCTTCATGCAAAACAGTCTTCTGATTTGCCATCTTGTAGTGGGAAGCAGTCCAAATGTGATGGAACAACGAATGCACCAGTTACAAATTCTGTTCTGTTTTTCGCAAACCAGACTTCCTTTTTCCAGTCTGACGGTAAGAAGCAGAAGAACTTTGATGGAGTTAGATACAGAAAGAGAGGAGTGAAGGATGGATCAGTGGAACTTCAGGATTTCACATTTGTGACTGCACAGGAAGTTGTAATGATGGATAAGGATTCACCAGTTGATAAAACAGATGCAACAGACAAGGAGGTGACAGTGGATAAAACAGATGCAACAGAAAGCAGGAGAACTGAAACTCTCAGAATGAAGCTTTGGGAGATATTGGGAACCATTTCTTCACCTGATGAGCATTCCAAATCTCAGCCTCCTGAGGTTGGTGATAGTATAAATCCACAGCCGGAATTTGATCAAATGGGTTCCACAGTTGTCAAGCCTAAGCATATACCAGAGCAAAAGTATGATGACAAGGGTGATGCATTTATCAAACCCCAACAAAATTCAGATACTATAGAAATGGATTCTGAAAGTCCTGATAATATTGTCAGGAGACCTGTGACTCATTCATTGAGCCGAAAGAGAGGTCCAACGAAAAAACAGCAGACAAGTACAAAAAATGGTCCATCCTCTGGTTACAAACTGAAACAGCAAGAGAACAACATATTTTCCTTCGAACAAGAATGCGATGGGAAGCTACATGGCTCTTCTGGTGGTGGATCCTCAAAGTCTATGCGGAAGAAGACAGAGGTCAAAAGTTTCAGAACTGAGTCCCATGGGATCTGCCTTCCTGAAAAGGATAAATCAACTAAGACTCAGAAAGAGATTATTAGGAGTAAGCCACAATCACCTGCCAAGCAAAATAGTTCTGTAGGCAAGAAAATAGGAGATTCTCATGGTTGCCAACATGAGAATAAAAGAGAGTATCATGAACTGGAAAAAAATATTCAAGAGCAGGAAATCTGCCAATCACCACTCATATACAAGAAATTTAAGGCAGATTTTGTCAGTCCCGCAAATAACGACTACCAGGAAGACAATGGCAATCCAAGCTTGAAGAAAGCTACTAGTCCAGAAGCAGATGATCTGAGTCCCACATTTGGAATTAAAACACCCACATCAAGTTCTTCCCCTAGCTCAATCCCAAACTCAGACCAAATGGTAGATGCTAGTAGTCCTGCTGTAACAGAGAGGAGATTTACTGTGGGAGACATTCGAAGTTTCAGTACTTTCTGGACTCCAAAACAAGATTGTTGTGATAATGAACAAGCAAAATCTTCTGATGCTGTAGAGGAACTCAAGGATTCACCATTGAGAAAAACAACACCGGATATGGAAGAAAATGCTGCAGAAGATGGCCTTCTTTCATCATCATCTGAAGAGGGGGACTTGAGGAGTTGTGGAGAAGGTTCTCCTATTATCCAAGGACGTGACTGGACTGAAGAAGATAACTGGATAGAGGAACCTTCAGAGCCTAATCTAGTGGATGGACTGGCTAGGGCTGTTGAATTGTTTACATTGGAATTAGAAAAACTTAAAGCCAAAATGAAGTCAGCAACTAATAGGAAATCCTTTGAAATTTTAATGTCTGTTGCTGCGGAGGTACATATGCAGCTGCAAACTGTTGACTCTCAGATTCAAACAGACATAGGGAAGCTCACAAACCTCAGTAAATCAAAGAGAAAAAGGCTGGAATCAAGGAGCACACTTGAAGGGCTGGAAGTGTACCTGACAGAGTTTAAGGGAACTGTTGATAAGCAAAAAGCATCACACAGAAAGCTTCTCGTGCAAGTGGAAGAAGCAATTGAGGCCCAATTCAATGATGCCCAAAGAAGAATCCAAGTCACCCAAAAGATGGCGCGTGGAAAGATGCTCCAGTTGAAACACGAACTGGCATTGTGTTTAAAAGAGGGCATTCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0007049 GO:0008150 GO:0009987 GO:0010564 GO:0022414 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0040020 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051321 GO:0051445 GO:0051726 GO:0051783 GO:0051983 GO:0060629 GO:0060631 GO:0065007 GO:0070013 GO:0090173 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

862

Amino Acids

96.09

Weight (kDa)

7.8

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT2G46980 AT5G20995
fragaria_vesca	FvH4_1g26160 FvH4_1g26160 FvH4_4g08230
malus_domestica	MD09G1291300.v1.1 MD17G1286100.v1.1
prunus_persica	Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1 Prupe.3G001600_v2.0.a1
pyrus_communis	pycom09g19920 pycom17g28230
rosa_chinensis	RchiOBHm_Chr3g0485651
rosa_laevigata	RLG00000023137
rosa_multiflora	Rmu_co8410931.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396550
rosa_rugosa	Rorug03G0220500
rosa_samantha	Rh3AG269400 Rh3BG305200 Rh3CG303500 Rh3DG299700
rosa_wichuraiana	Rw3G024010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	550, 1519
Acc36I	ACCTGC	2 cut(s)	550, 1519
AccB1I	GGYRCC	2 cut(s)	88, 448
AccB7I	CCANNNNNTGG	2 cut(s)	1292, 2515
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	2521
AciI	CCGC	4 cut(s)	118, 1396, 1674, 2258
AclWI	GGATC	7 cut(s)	545, 558, 611, 823, 1374, 1387, 1448
AcsI	RAATTY	6 cut(s)	565, 709, 1067, 1162, 1649, 2238
AcuI	CTGAAG	5 cut(s)	597, 812, 2058, 2112, 2121
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	7 cut(s)	72, 583, 610, 1273, 1888, 2265, 2387
AfiI	CCNNNNNNNGG	4 cut(s)	1040, 1292, 1760, 2515
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	9 cut(s)	203, 1610, 1717, 2168, 2237, 2300, 2372, 2479, 2542
AhlI	ACTAGT	1 cut(s)	1727
AjiI	CACGTC	1 cut(s)	2090
AjnI	CCWGG	2 cut(s)	91, 1689
AjuI	GAANNNNNNNTTGG	2 cut(s)	961, 993
AleI	CACNNNNGTG	1 cut(s)	842
Alw21I	GWGCWC	1 cut(s)	2366
Alw26I	GTCTC	3 cut(s)	159, 1207, 1863
AlwI	GGATC	7 cut(s)	545, 558, 611, 823, 1374, 1387, 1448
AoxI	GGCC	2 cut(s)	2017, 2469
ApeKI	GCWGC	7 cut(s)	248, 259, 524, 2006, 2255, 2272, 2275
ApoI	RAATTY	6 cut(s)	565, 709, 1067, 1162, 1649, 2238
ArsI	GACNNNNNNTTYG	2 cut(s)	1231, 1263
AseI	ATTAAT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	997
AspLEI	GCGC	2 cut(s)	91, 2521
AspS9I	GGNCC	4 cut(s)	46, 1247, 1283, 2470
AsuII	TTCGAA	2 cut(s)	1335, 1876
AvaII	GGWCC	3 cut(s)	46, 1247, 1283
AxyI	CCTNAGG	1 cut(s)	1035
BamHI	GGATCC	2 cut(s)	550, 1379
BanI	GGYRCC	2 cut(s)	88, 448
BarI	GAAGNNNNNNTAC	2 cut(s)	1870, 1902
BauI	CACGAG	2 cut(s)	596, 2444
BbsI	GAAGAC	3 cut(s)	633, 1409, 1701
Bbv12I	GWGCWC	1 cut(s)	2366
BbvI	GCAGC	7 cut(s)	235, 246, 511, 1993, 2242, 2262, 2284
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	93, 1691
BclI	TGATCA	1 cut(s)	1072
BcoDI	GTCTC	3 cut(s)	159, 1207, 1863
BcuI	ACTAGT	1 cut(s)	1727
BfaI	CTAG	6 cut(s)	546, 1728, 1794, 1830, 2141, 2157
BfmI	CTRYAG	6 cut(s)	8, 249, 1173, 1530, 1947, 2007
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	2 cut(s)	550, 1519
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	7 cut(s)	249, 260, 525, 2007, 2256, 2273, 2276
BlsI	GCNGC	7 cut(s)	250, 261, 526, 2008, 2257, 2274, 2277
BmcAI	AGTACT	2 cut(s)	583, 1888
Bme1390I	CCNGG	2 cut(s)	93, 1691
Bme18I	GGWCC	3 cut(s)	46, 1247, 1283
BmgBI	CACGTC	1 cut(s)	2090
BmgT120I	GGNCC	4 cut(s)	46, 1247, 1283, 2470
BmiI	GGNNCC	7 cut(s)	90, 450, 552, 994, 1084, 1381, 2124
BmrFI	CCNGG	2 cut(s)	93, 1691
BmsI	GCATC	9 cut(s)	596, 889, 925, 1129, 1816, 1933, 2435, 2473, 2520
BoxI	GACNNNNGTC	1 cut(s)	1409
BpiI	GAAGAC	3 cut(s)	633, 1409, 1701
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	3 cut(s)	229, 441, 2519
Bpu10I	CCTNAGC	1 cut(s)	1101
Bpu14I	TTCGAA	2 cut(s)	1335, 1876
BpuEI	CTTGAG	2 cut(s)	1943, 2071
Bsa29I	ATCGAT	2 cut(s)	218, 380
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	1207
BsaJI	CCNNGG	4 cut(s)	429, 489, 1435, 2083
BsaWI	WCCGGW	1 cut(s)	1987
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	1040, 1292, 1760, 2515
Bse1I	ACTGG	9 cut(s)	701, 748, 884, 1599, 2099, 2117, 2157, 2536, 2556
Bse21I	CCTNAGG	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	93, 1691
BseCI	ATCGAT	2 cut(s)	218, 380
BseDI	CCNNGG	4 cut(s)	429, 489, 1435, 2083
BseGI	GGATG	5 cut(s)	316, 352, 817, 1286, 2152
BseLI	CCNNNNNNNGG	4 cut(s)	1040, 1292, 1760, 2515
BseMII	CTCAG	9 cut(s)	979, 1026, 1040, 1419, 1490, 1739, 1824, 2306, 2341
BseNI	ACTGG	9 cut(s)	701, 748, 884, 1599, 2099, 2117, 2157, 2536, 2556
BseRI	GAGGAG	3 cut(s)	816, 1867, 2068
BseXI	GCAGC	7 cut(s)	235, 246, 511, 1993, 2242, 2262, 2284
BsgI	GTGCAG	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	2521
BshFI	GGCC	2 cut(s)	2019, 2471
BshNI	GGYRCC	2 cut(s)	88, 448
BshVI	ATCGAT	2 cut(s)	218, 380
BsiHKAI	GWGCWC	1 cut(s)	2366
BsiSI	CCGG	2 cut(s)	1064, 1988
BslFI	GGGAC	4 cut(s)	1417, 1656, 1737, 2060
BslI	CCNNNNNNNGG	4 cut(s)	1040, 1292, 1760, 2515
BsmAI	GTCTC	3 cut(s)	159, 1207, 1863
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	4 cut(s)	1417, 1656, 1737, 2060
BsmI	GAATGC	4 cut(s)	700, 1015, 1349, 2574
BsnI	GGCC	2 cut(s)	2019, 2471
Bso31I	GGTCTC	1 cut(s)	1207
Bsp119I	TTCGAA	2 cut(s)	1335, 1876
Bsp1286I	GDGCHC	1 cut(s)	2366
Bsp143I	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
Bsp19I	CCATGG	1 cut(s)	1435
BspACI	CCGC	4 cut(s)	118, 1396, 1674, 2258
BspANI	GGCC	2 cut(s)	2019, 2471
BspCNI	CTCAG	9 cut(s)	978, 1027, 1039, 1420, 1489, 1740, 1823, 2305, 2340
BspDI	ATCGAT	2 cut(s)	218, 380
BspFNI	CGCG	1 cut(s)	2521
BspHI	TCATGA	1 cut(s)	1588
BspLI	GGNNCC	7 cut(s)	90, 450, 552, 994, 1084, 1381, 2124
BspMAI	CTGCAG	2 cut(s)	253, 2011
BspMI	ACCTGC	2 cut(s)	550, 1519
BspPI	GGATC	7 cut(s)	545, 558, 611, 823, 1374, 1387, 1448
BspQI	GCTCTTC	1 cut(s)	1372
BspT104I	TTCGAA	2 cut(s)	1335, 1876
BspT107I	GGYRCC	2 cut(s)	88, 448
BspTNI	GGTCTC	1 cut(s)	1207
BsrI	ACTGG	9 cut(s)	701, 748, 884, 1599, 2099, 2117, 2157, 2536, 2556
BssECI	CCNNGG	4 cut(s)	429, 489, 1435, 2083
BssMI	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	2 cut(s)	596, 2444
BssT1I	CCWWGG	3 cut(s)	429, 1435, 2083
Bst2BI	CACGAG	2 cut(s)	596, 2444
Bst2UI	CCWGG	2 cut(s)	93, 1691
Bst4CI	ACNGT	8 cut(s)	173, 639, 758, 922, 1090, 1864, 2284, 2410
Bst6I	CTCTTC	3 cut(s)	630, 1372, 2034
BstACI	GRCGYC	1 cut(s)	89
BstBI	TTCGAA	2 cut(s)	1335, 1876
BstDSI	CCRYGG	2 cut(s)	489, 1435
BstF5I	GGATG	5 cut(s)	316, 352, 817, 1286, 2152
BstFNI	CGCG	1 cut(s)	2521
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 2521
BstKTI	GATC	8 cut(s)	222, 553, 619, 818, 1075, 1382, 1443, 1747
BstMAI	GTCTC	3 cut(s)	159, 1207, 1863
BstMBI	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 236, 245, 1710, 2446, 2468
BstNI	CCWGG	2 cut(s)	93, 1691
BstNSI	RCATGY	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	1409
BstSCI	CCNGG	2 cut(s)	91, 1689
BstSFI	CTRYAG	6 cut(s)	8, 249, 1173, 1530, 1947, 2007
BstUI	CGCG	1 cut(s)	2521
BstV1I	GCAGC	7 cut(s)	235, 246, 511, 1993, 2242, 2262, 2284
BstV2I	GAAGAC	3 cut(s)	633, 1409, 1701
BstX2I	RGATCY	4 cut(s)	550, 616, 1379, 1440
BstYI	RGATCY	4 cut(s)	550, 616, 1379, 1440
Bsu15I	ATCGAT	2 cut(s)	218, 380
Bsu36I	CCTNAGG	1 cut(s)	1035
BsuRI	GGCC	2 cut(s)	2019, 2471
BsuTUI	ATCGAT	2 cut(s)	218, 380
BtgI	CCRYGG	2 cut(s)	489, 1435
BtgZI	GCGATG	1 cut(s)	1362
BtrI	CACGTC	1 cut(s)	2090
BtsCI	GGATG	5 cut(s)	316, 352, 817, 1286, 2152
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	293, 825, 927
BveI	ACCTGC	2 cut(s)	550, 1519
CciI	TCATGA	1 cut(s)	1588
CfoI	GCGC	2 cut(s)	91, 2521
Cfr13I	GGNCC	4 cut(s)	46, 1247, 1283, 2470
ClaI	ATCGAT	2 cut(s)	218, 380
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	7 cut(s)	71, 582, 609, 1272, 1887, 2264, 2386
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	7 cut(s)	108, 629, 1361, 1436, 1556, 1568, 1589
CviQI	GTAC	7 cut(s)	71, 582, 609, 1272, 1887, 2264, 2386
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	8 cut(s)	221, 552, 618, 817, 1074, 1381, 1442, 1746
DpnII	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
DraI	TTTAAA	1 cut(s)	2565
Eam1104I	CTCTTC	3 cut(s)	630, 1372, 2034
EarI	CTCTTC	3 cut(s)	630, 1372, 2034
Eco130I	CCWWGG	3 cut(s)	429, 1435, 2083
Eco31I	GGTCTC	1 cut(s)	1207
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	46, 1247, 1283
Eco57I	CTGAAG	5 cut(s)	597, 812, 2058, 2112, 2121
Eco81I	CCTNAGG	1 cut(s)	1035
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	91, 1689
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	3 cut(s)	429, 1435, 2083
EcoT22I	ATGCAT	1 cut(s)	1144
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	429, 1435, 2083
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	7 cut(s)	111, 632, 1364, 1439, 1559, 1571, 1592
FalI	AAGNNNNNCTT	2 cut(s)	2004, 2036
FaqI	GGGAC	4 cut(s)	1417, 1656, 1737, 2060
FatI	CATG	7 cut(s)	107, 628, 1360, 1435, 1555, 1567, 1588
FauI	CCCGC	2 cut(s)	125, 1681
FauNDI	CATATG	1 cut(s)	2268
FbaI	TGATCA	1 cut(s)	1072
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	7 cut(s)	249, 260, 525, 2007, 2256, 2273, 2276
FokI	GGATG	5 cut(s)	323, 339, 824, 1273, 2159
Fsp4HI	GCNGC	7 cut(s)	249, 260, 525, 2007, 2256, 2273, 2276
FspBI	CTAG	6 cut(s)	546, 1728, 1794, 1830, 2141, 2157
GlaI	GCGC	2 cut(s)	90, 2520
GluI	GCNGC	7 cut(s)	249, 260, 525, 2007, 2256, 2273, 2276
GsuI	CTGGAG	3 cut(s)	229, 441, 2519
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	2019, 2471
HapII	CCGG	2 cut(s)	1064, 1988
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	2 cut(s)	91, 2521
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	7 cut(s)	111, 632, 1364, 1439, 1559, 1571, 1592
Hin6I	GCGC	2 cut(s)	89, 2519
HinP1I	GCGC	2 cut(s)	89, 2519
HincII	GTYRAC	1 cut(s)	2287
HindII	GTYRAC	1 cut(s)	2287
HindIII	AAGCTT	3 cut(s)	974, 1711, 2438
HpaII	CCGG	2 cut(s)	1064, 1988
Hpy166II	GTNNAC	5 cut(s)	397, 440, 2175, 2287, 2386
Hpy8I	GTNNAC	5 cut(s)	397, 440, 2175, 2287, 2386
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	7 cut(s)	802, 1342, 1457, 2030, 2060, 2136, 2366
HpyCH4III	ACNGT	8 cut(s)	173, 639, 758, 922, 1090, 1864, 2284, 2410
HpyCH4IV	ACGT	1 cut(s)	2089
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 236, 245, 1710, 2446, 2468
HpySE526I	ACGT	1 cut(s)	2089
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	7 cut(s)	111, 632, 1364, 1439, 1559, 1571, 1592
HspAI	GCGC	2 cut(s)	89, 2519
KasI	GGCGCC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
LguI	GCTCTTC	1 cut(s)	1372
LmnI	GCTCC	3 cut(s)	508, 2361, 2538
Lsp1109I	GCAGC	7 cut(s)	235, 246, 511, 1993, 2242, 2262, 2284
LweI	GCATC	9 cut(s)	596, 889, 925, 1129, 1816, 1933, 2435, 2473, 2520
MaeI	CTAG	6 cut(s)	546, 1728, 1794, 1830, 2141, 2157
MaeII	ACGT	1 cut(s)	2089
MalI	GATC	8 cut(s)	221, 552, 618, 817, 1074, 1381, 1442, 1746
MboI	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
MfeI	CAATTG	2 cut(s)	325, 2463
MflI	RGATCY	4 cut(s)	550, 616, 1379, 1440
MhlI	GDGCHC	1 cut(s)	2366
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	7 cut(s)	432, 1216, 1439, 1468, 1759, 1891, 2282
MmeI	TCCRAC	1 cut(s)	1274
Mph1103I	ATGCAT	1 cut(s)	1144
MroXI	GAANNNNTTC	1 cut(s)	997
MseI	TTAA	7 cut(s)	348, 1653, 1767, 2196, 2243, 2400, 2564
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	3 cut(s)	248, 524, 2275
MspI	CCGG	2 cut(s)	1064, 1988
MspR9I	CCNGG	2 cut(s)	93, 1691
MunI	CAATTG	2 cut(s)	325, 2463
Mva1269I	GAATGC	4 cut(s)	700, 1015, 1349, 2574
MvaI	CCWGG	2 cut(s)	93, 1691
MvnI	CGCG	1 cut(s)	2521
MwoI	GCNNNNNNNGC	6 cut(s)	86, 236, 245, 1710, 2446, 2468
NarI	GGCGCC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	1435
NdeI	CATATG	1 cut(s)	2268
NdeII	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
NlaIII	CATG	7 cut(s)	111, 632, 1364, 1439, 1559, 1571, 1592
NlaIV	GGNNCC	7 cut(s)	90, 450, 552, 994, 1084, 1381, 2124
NmuCI	GTSAC	8 cut(s)	241, 424, 517, 844, 916, 1219, 2090, 2503
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	1 cut(s)	111
NspV	TTCGAA	2 cut(s)	1335, 1876
OliI	CACNNNNGTG	1 cut(s)	842
PagI	TCATGA	1 cut(s)	1588
PaqCI	CACCTGC	2 cut(s)	550, 1519
PciI	ACATGT	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	1372
PctI	GAATGC	4 cut(s)	700, 1015, 1349, 2574
PdmI	GAANNNNTTC	1 cut(s)	997
PfeI	GAWTC	9 cut(s)	166, 290, 878, 1184, 1550, 1964, 2296, 2354, 2496
PflMI	CCANNNNNTGG	2 cut(s)	1292, 2515
PkrI	GCNGC	7 cut(s)	250, 261, 526, 2008, 2257, 2274, 2277
PleI	GAGTC	7 cut(s)	431, 1216, 1438, 1468, 1758, 1891, 2282
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	7 cut(s)	431, 1216, 1438, 1468, 1758, 1891, 2282
PscI	ACATGT	1 cut(s)	107
PshAI	GACNNNNGTC	1 cut(s)	1409
PshBI	ATTAAT	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	91, 1689
PspGI	CCWGG	2 cut(s)	91, 1689
PspN4I	GGNNCC	7 cut(s)	90, 450, 552, 994, 1084, 1381, 2124
PspPI	GGNCC	4 cut(s)	46, 1247, 1283, 2470
PstI	CTGCAG	2 cut(s)	253, 2011
PsuI	RGATCY	4 cut(s)	550, 616, 1379, 1440
PvuII	CAGCTG	3 cut(s)	248, 524, 2275
RsaI	GTAC	7 cut(s)	72, 583, 610, 1273, 1888, 2265, 2387
RsaNI	GTAC	7 cut(s)	71, 582, 609, 1272, 1887, 2264, 2386
RseI	CAYNNNNRTG	1 cut(s)	842
SapI	GCTCTTC	1 cut(s)	1372
SaqAI	TTAA	7 cut(s)	348, 1653, 1767, 2196, 2243, 2400, 2564
SatI	GCNGC	7 cut(s)	249, 260, 525, 2007, 2256, 2273, 2276
Sau3AI	GATC	8 cut(s)	219, 550, 616, 815, 1072, 1379, 1440, 1744
Sau96I	GGNCC	4 cut(s)	46, 1247, 1283, 2470
ScaI	AGTACT	2 cut(s)	583, 1888
SchI	GAGTC	7 cut(s)	432, 1216, 1439, 1468, 1759, 1891, 2282
ScrFI	CCNGG	2 cut(s)	93, 1691
SduI	GDGCHC	1 cut(s)	2366
SfaNI	GCATC	9 cut(s)	596, 889, 925, 1129, 1816, 1933, 2435, 2473, 2520
SfcI	CTRYAG	6 cut(s)	8, 249, 1173, 1530, 1947, 2007
SfoI	GGCGCC	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	1335, 1876
SinI	GGWCC	3 cut(s)	46, 1247, 1283
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	1958, 2050
SmoI	CTYRAG	2 cut(s)	1958, 2050
SpeI	ACTAGT	1 cut(s)	1727
SsiI	CCGC	4 cut(s)	118, 1396, 1674, 2258
SspDI	GGCGCC	1 cut(s)	88
SspI	AATATT	2 cut(s)	1204, 1606
SspMI	CTAG	6 cut(s)	546, 1728, 1794, 1830, 2141, 2157
StyD4I	CCNGG	2 cut(s)	91, 1689
StyI	CCWWGG	3 cut(s)	429, 1435, 2083
TaaI	ACNGT	8 cut(s)	173, 639, 758, 922, 1090, 1864, 2284, 2410
TaiI	ACGT	1 cut(s)	2092
TaqI	TCGA	7 cut(s)	25, 36, 218, 368, 380, 1335, 1876
TatI	WGTACW	3 cut(s)	581, 1271, 1886
TfiI	GAWTC	9 cut(s)	166, 290, 878, 1184, 1550, 1964, 2296, 2354, 2496
Tru1I	TTAA	7 cut(s)	348, 1653, 1767, 2196, 2243, 2400, 2564
Tru9I	TTAA	7 cut(s)	348, 1653, 1767, 2196, 2243, 2400, 2564
TscAI	CASTG	3 cut(s)	300, 825, 927
TseFI	GTSAC	8 cut(s)	241, 424, 517, 844, 916, 1219, 2090, 2503
TseI	GCWGC	7 cut(s)	248, 259, 524, 2006, 2255, 2272, 2275
Tsp45I	GTSAC	8 cut(s)	241, 424, 517, 844, 916, 1219, 2090, 2503
TspGWI	ACGGA	2 cut(s)	59, 506
TspRI	CASTG	3 cut(s)	300, 825, 927
Van91I	CCANNNNNTGG	2 cut(s)	1292, 2515
VpaK11BI	GGWCC	3 cut(s)	46, 1247, 1283
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	6 cut(s)	565, 709, 1067, 1162, 1649, 2238
XceI	RCATGY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1697
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	997
XspI	CTAG	6 cut(s)	546, 1728, 1794, 1830, 2141, 2157
ZrmI	AGTACT	2 cut(s)	583, 1888
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.