Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007858

Physical Location & Seq

Genomic Coordinates Reverse (-)

18064426 .. 18067977

Gene Structure 3552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGACCACACTTTCCAGGCTCGCCGACCTCCCTTCCTTCGCCGCCCCTCCGCCTCTTCTCACTCACCTCCCACCTCCCTCCGTCTTCCTCACTCCCAAACCCAACAAGCCCTCTCCTCCTCATCATTTCTTCAAACTCCGATGCTCGGTCGCCAAACAGTCCACCGTTACTCCGGTGGATAGTGGTTTGAAGGATGATTTGGTTCTGGGGGATCCGAATGCACCTCGGTTCGTATTGTGGGATGGCAAGTTGAGGCCTGTACCTTCTAGCCCGGCGGACATAGCTTTCTTTGACTTGATGAGCATTGGCGGCAAACTCAGGGCTGCATTTGGTGCTCTTGGAATTCGTCCCTCTCCTCCTCCTCCAGGTCAGGAGGAATCAGTTGAAGAGTTTGTCCGTCGTAATCTTGGAGATGAGGTTTTTGAACGCCTGATTGAGCCTTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCAAAGTTAAGTATGAAAGCAGCATTTGGCAAAGTTTGGAACCTAGAGCAAAATGGGGGTAGCATCATTGGTGGAGCCTTTAAAGCAATCCAGGAGAGAAATCGTGCTCCAAAGACACCTCGAGATCCGCGTCTACCAAAGCCAAAGGGCCAAACAGTTGGATCTCTTAGGAAGGGTCTTTCCATGCTGCCAGATGCACTTTCTTCAAGGTTGGGTGACAAAGTGAAGTTATCCTGGAAGCTTTCAGGTATCAGTAAATTGGACAAAGGAGGGTACACTCTGACATATGAAACTCCAGAAGGATTGGTCTCAGTACTGAGTAAAAGTGTTGTTATGACCATTCCATCCTATGTTGCAAGCAGTCTATTGCGTCCTCTATCAGCTGCTGCTGCAGATGCATTATCACAATTTTATTACCCACCAGTTGCAGCTGTGTCTATTTCATATCCAAAAGAAGCAATCCGGACTGAATGCCTAAGAGATGGTGAACTAAAGGGATTTGGTCAACTGCATCCTCGTAGCCAAGGGCTGAAAACATTAGGAACTATATACAGCTCATCACTCTTTCCTAATCGAGCACCAGCTGGAAGGGTACTGCTCTTGAACTATATTGGAGGGGCCACCAATCCCGGTATTTTGTCCAAGGTGAGAAAGTATACTTCAATACATCGAACAGAGAGTGAACTTGTTGAAGCAGTTCATCAGGATTTGAAAAAAAATGCTGCAAATGCTGCTCTCAGGGATACTGAGACCCAAGGGTTGTTCCTTGGTGGGAATTATGTGTCCGGTGTAGCCTTGGGCCGGTGTGTTGAGGGTGCGTATGATATTGCAGCTGATGTGGCCAATTTTCTATCACAATATGCTTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004729 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016491 GO:0016627 GO:0016634 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0070818 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

447

Amino Acids

48.08

Weight (kDa)

9.53

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	60 - 396	7.9e-53	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01690 AT4G01690
fragaria_vesca	FvH4_1g26170 FvH4_1g26170 FvH4_1g26170
malus_domestica	MD09G1291200.v1.1
prunus_persica	Prupe.3G001700_v2.0.a1 Prupe.3G001700_v2.0.a1
pyrus_communis	pycom09g19900 pycom17g28240
rosa_chinensis	RchiOBHm_Chr3g0485661
rosa_laevigata	RLG00000023135
rosa_multiflora	Rmu_sc0004711.1_g000001 Rmu_sc0017693.1_g000001 Rmu_sc0017693.1_g000002
rosa_roxburghii	Rroxscaffold_6G00396540 Rroxscaffold_6G00396860
rosa_rugosa	Rorug03G0220500 Rorug03G0220500
rosa_samantha	Rh3AG269500 Rh3BG305500 Rh3CG303600 Rh3DG299800
rosa_wichuraiana	Rw3G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	604, 1127
AccII	CGCG	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	933
AciI	CCGC	6 cut(s)	42, 50, 275, 309, 461, 599
AclWI	GGATC	5 cut(s)	206, 219, 461, 590, 640
AcoI	YGGCCR	1 cut(s)	1311
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	4 cut(s)	261, 746, 786, 1065
AfiI	CCNNNNNNNGG	3 cut(s)	145, 365, 1272
AjnI	CCWGG	4 cut(s)	14, 364, 561, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	7 cut(s)	284, 712, 854, 902, 1026, 1055, 1304
AluI	AGCT	7 cut(s)	284, 712, 854, 902, 1026, 1055, 1304
Alw21I	GWGCWC	3 cut(s)	337, 580, 1051
Alw26I	GTCTC	2 cut(s)	784, 1214
AlwI	GGATC	5 cut(s)	206, 219, 461, 590, 640
AlwNI	CAGNNNCTG	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	591
Aor13HI	TCCGGA	1 cut(s)	933
AoxI	GGCC	5 cut(s)	254, 619, 1089, 1270, 1311
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspS9I	GGNCC	3 cut(s)	619, 1089, 1270
AsuC2I	CCSGG	2 cut(s)	272, 1101
AsuHPI	GGTGA	5 cut(s)	56, 476, 698, 968, 1129
AvaI	CYCGRG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	1313
BamHI	GGATCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	3 cut(s)	337, 580, 1051
BccI	CCATC	3 cut(s)	236, 823, 947
BciT130I	CCWGG	4 cut(s)	16, 366, 563, 706
BciVI	GTATCC	1 cut(s)	1207
BcnI	CCSGG	2 cut(s)	272, 1101
BcoDI	GTCTC	2 cut(s)	784, 1214
BfaI	CTAG	2 cut(s)	267, 515
BfmI	CTRYAG	1 cut(s)	861
BfuI	GTATCC	1 cut(s)	1207
BmcAI	AGTACT	1 cut(s)	786
Bme1390I	CCNGG	6 cut(s)	16, 272, 366, 563, 706, 1101
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	3 cut(s)	619, 1089, 1270
BmiI	GGNNCC	4 cut(s)	213, 512, 547, 1090
BmrFI	CCNGG	6 cut(s)	16, 272, 366, 563, 706, 1101
BmsI	GCATC	5 cut(s)	131, 543, 655, 856, 991
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	2 cut(s)	348, 750
BpuMI	CCSGG	2 cut(s)	272, 1101
BsaI	GGTCTC	2 cut(s)	784, 1214
BsaJI	CCNNGG	6 cut(s)	224, 994, 1113, 1225, 1237, 1266
BsaWI	WCCGGW	3 cut(s)	172, 933, 1256
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 365, 1272
Bse118I	RCCGGY	1 cut(s)	1272
Bse1I	ACTGG	1 cut(s)	893
BseAI	TCCGGA	1 cut(s)	933
BseBI	CCWGG	4 cut(s)	16, 366, 563, 706
BseDI	CCNNGG	6 cut(s)	224, 994, 1113, 1225, 1237, 1266
BseGI	GGATG	4 cut(s)	199, 247, 815, 982
BseLI	CCNNNNNNNGG	3 cut(s)	145, 365, 1272
BseMII	CTCAG	5 cut(s)	331, 779, 795, 1209, 1222
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	5 cut(s)	105, 108, 345, 348, 351
Bsh1236I	CGCG	1 cut(s)	601
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	5 cut(s)	256, 621, 1091, 1272, 1313
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	3 cut(s)	337, 580, 1051
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	6 cut(s)	173, 272, 934, 1101, 1257, 1273
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	145, 365, 1272
BsmAI	GTCTC	2 cut(s)	784, 1214
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	2 cut(s)	223, 947
BsnI	GGCC	5 cut(s)	256, 621, 1091, 1272, 1313
Bso31I	GGTCTC	2 cut(s)	784, 1214
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	3 cut(s)	337, 580, 1051
Bsp13I	TCCGGA	1 cut(s)	933
Bsp143I	GATC	4 cut(s)	211, 466, 595, 632
BspACI	CCGC	6 cut(s)	42, 50, 275, 309, 461, 599
BspANI	GGCC	5 cut(s)	256, 621, 1091, 1272, 1313
BspCNI	CTCAG	5 cut(s)	330, 780, 794, 1210, 1221
BspEI	TCCGGA	1 cut(s)	933
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	213, 512, 547, 1090
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	5 cut(s)	206, 219, 461, 590, 640
BspTNI	GGTCTC	2 cut(s)	784, 1214
BsrFI	RCCGGY	1 cut(s)	1272
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	1272
BssECI	CCNNGG	6 cut(s)	224, 994, 1113, 1225, 1237, 1266
BssMI	GATC	4 cut(s)	211, 466, 595, 632
BssNAI	GTATAC	1 cut(s)	1128
BssT1I	CCWWGG	5 cut(s)	994, 1113, 1225, 1237, 1266
Bst1107I	GTATAC	1 cut(s)	1128
Bst2UI	CCWGG	4 cut(s)	16, 366, 563, 706
Bst4CI	ACNGT	3 cut(s)	159, 166, 628
Bst6I	CTCTTC	2 cut(s)	60, 381
BstAPI	GCANNNNNTGC	2 cut(s)	332, 1202
BstC8I	GCNNGC	2 cut(s)	21, 829
BstDEI	CTNAG	7 cut(s)	317, 638, 781, 788, 947, 1208, 1218
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	4 cut(s)	199, 247, 815, 982
BstFNI	CGCG	1 cut(s)	601
BstKTI	GATC	4 cut(s)	214, 469, 598, 635
BstMAI	GTCTC	2 cut(s)	784, 1214
BstMBI	GATC	4 cut(s)	211, 466, 595, 632
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	9 cut(s)	281, 309, 332, 554, 860, 866, 1199, 1202, 1310
BstNI	CCWGG	4 cut(s)	16, 366, 563, 706
BstSCI	CCNGG	6 cut(s)	14, 270, 364, 561, 704, 1099
BstSFI	CTRYAG	1 cut(s)	861
BstUI	CGCG	1 cut(s)	601
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	3 cut(s)	211, 595, 632
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	3 cut(s)	211, 595, 632
BstZ17I	GTATAC	1 cut(s)	1128
BsuI	GTATCC	1 cut(s)	1207
BsuRI	GGCC	5 cut(s)	256, 621, 1091, 1272, 1313
BtsCI	GGATG	4 cut(s)	199, 247, 815, 982
Cac8I	GCNNGC	2 cut(s)	21, 829
CaiI	CAGNNNCTG	1 cut(s)	857
Cfr10I	RCCGGY	1 cut(s)	1272
Cfr13I	GGNCC	3 cut(s)	619, 1089, 1270
CseI	GACGC	2 cut(s)	590, 830
Csp6I	GTAC	4 cut(s)	260, 745, 785, 1064
CviAII	CATG	1 cut(s)	655
CviQI	GTAC	4 cut(s)	260, 745, 785, 1064
DdeI	CTNAG	7 cut(s)	317, 638, 781, 788, 947, 1208, 1218
DpnI	GATC	4 cut(s)	213, 468, 597, 634
DpnII	GATC	4 cut(s)	211, 466, 595, 632
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	1311
Eam1104I	CTCTTC	2 cut(s)	60, 381
EarI	CTCTTC	2 cut(s)	60, 381
EciI	GGCGGA	2 cut(s)	39, 290
Eco130I	CCWWGG	5 cut(s)	994, 1113, 1225, 1237, 1266
Eco147I	AGGCCT	1 cut(s)	256
Eco31I	GGTCTC	2 cut(s)	784, 1214
Eco88I	CYCGRG	1 cut(s)	591
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	4 cut(s)	14, 364, 561, 704
EcoT14I	CCWWGG	5 cut(s)	994, 1113, 1225, 1237, 1266
EcoT22I	ATGCAT	1 cut(s)	871
ErhI	CCWWGG	5 cut(s)	994, 1113, 1225, 1237, 1266
FaeI	CATG	1 cut(s)	658
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	654
FauI	CCCGC	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	757
FblI	GTMKAC	2 cut(s)	604, 1127
FokI	GGATG	4 cut(s)	206, 254, 802, 969
FspBI	CTAG	2 cut(s)	267, 515
GsuI	CTGGAG	2 cut(s)	348, 750
HaeIII	GGCC	5 cut(s)	256, 621, 1091, 1272, 1313
HapII	CCGG	6 cut(s)	173, 272, 934, 1101, 1257, 1273
HgaI	GACGC	2 cut(s)	590, 830
Hin1II	CATG	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	977
HindII	GTYRAC	1 cut(s)	977
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	6 cut(s)	173, 272, 934, 1101, 1257, 1273
HphI	GGTGA	5 cut(s)	56, 476, 698, 968, 1129
Hpy166II	GTNNAC	7 cut(s)	162, 605, 747, 959, 977, 1128, 1154
Hpy188I	TCNGA	3 cut(s)	140, 216, 753
Hpy188III	TCNNGA	6 cut(s)	371, 593, 767, 934, 1072, 1175
Hpy8I	GTNNAC	7 cut(s)	162, 605, 747, 959, 977, 1128, 1154
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	8 cut(s)	42, 46, 184, 273, 480, 637, 764, 1053
HpyCH4III	ACNGT	3 cut(s)	159, 166, 628
HpyF10VI	GCNNNNNNNGC	9 cut(s)	281, 309, 332, 554, 860, 866, 1199, 1202, 1310
HpyF3I	CTNAG	7 cut(s)	317, 638, 781, 788, 947, 1208, 1218
Hsp92II	CATG	1 cut(s)	658
Kpn2I	TCCGGA	1 cut(s)	933
Kzo9I	GATC	4 cut(s)	211, 466, 595, 632
LmnI	GCTCC	2 cut(s)	545, 583
LweI	GCATC	5 cut(s)	131, 543, 655, 856, 991
MaeI	CTAG	2 cut(s)	267, 515
MaeIII	GTNAC	2 cut(s)	166, 686
MalI	GATC	4 cut(s)	213, 468, 597, 634
MboI	GATC	4 cut(s)	211, 466, 595, 632
MboII	GAAGA	5 cut(s)	47, 76, 121, 398, 666
MflI	RGATCY	3 cut(s)	211, 595, 632
MhlI	GDGCHC	3 cut(s)	337, 580, 1051
MlsI	TGGCCA	1 cut(s)	1313
MluCI	AATT	5 cut(s)	342, 728, 878, 1246, 1315
MluNI	TGGCCA	1 cut(s)	1313
MmeI	TCCRAC	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	1313
Mph1103I	ATGCAT	1 cut(s)	871
MroI	TCCGGA	1 cut(s)	933
MroXI	GAANNNNTTC	1 cut(s)	1167
MscI	TGGCCA	1 cut(s)	1313
MseI	TTAA	2 cut(s)	479, 552
Msp20I	TGGCCA	1 cut(s)	1313
MspA1I	CMGCKG	4 cut(s)	854, 902, 1055, 1304
MspI	CCGG	6 cut(s)	173, 272, 934, 1101, 1257, 1273
MspR9I	CCNGG	6 cut(s)	16, 272, 366, 563, 706, 1101
Mva1269I	GAATGC	2 cut(s)	223, 947
MvaI	CCWGG	4 cut(s)	16, 366, 563, 706
MvnI	CGCG	1 cut(s)	601
MwoI	GCNNNNNNNGC	9 cut(s)	281, 309, 332, 554, 860, 866, 1199, 1202, 1310
NciI	CCSGG	2 cut(s)	272, 1101
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	4 cut(s)	211, 466, 595, 632
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	4 cut(s)	213, 512, 547, 1090
NmuCI	GTSAC	1 cut(s)	686
NsiI	ATGCAT	1 cut(s)	871
PaeR7I	CTCGAG	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PctI	GAATGC	2 cut(s)	223, 947
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	1 cut(s)	377
PfoI	TCCNGGA	2 cut(s)	561, 704
Psp6I	CCWGG	4 cut(s)	14, 364, 561, 704
PspGI	CCWGG	4 cut(s)	14, 364, 561, 704
PspN4I	GGNNCC	4 cut(s)	213, 512, 547, 1090
PspPI	GGNCC	3 cut(s)	619, 1089, 1270
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	3 cut(s)	211, 595, 632
PvuII	CAGCTG	4 cut(s)	854, 902, 1055, 1304
RsaI	GTAC	4 cut(s)	261, 746, 786, 1065
RsaNI	GTAC	4 cut(s)	260, 745, 785, 1064
SaqAI	TTAA	2 cut(s)	479, 552
Sau3AI	GATC	4 cut(s)	211, 466, 595, 632
Sau96I	GGNCC	3 cut(s)	619, 1089, 1270
ScaI	AGTACT	1 cut(s)	786
ScrFI	CCNGG	6 cut(s)	16, 272, 366, 563, 706, 1101
SduI	GDGCHC	3 cut(s)	337, 580, 1051
SfaNI	GCATC	5 cut(s)	131, 543, 655, 856, 991
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	5 cut(s)	342, 728, 878, 1246, 1315
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	6 cut(s)	42, 50, 275, 309, 461, 599
SspMI	CTAG	2 cut(s)	267, 515
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	6 cut(s)	14, 270, 364, 561, 704, 1099
StyI	CCWWGG	5 cut(s)	994, 1113, 1225, 1237, 1266
TaaI	ACNGT	3 cut(s)	159, 166, 628
TaqI	TCGA	3 cut(s)	592, 1045, 1141
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	5 cut(s)	342, 728, 878, 1246, 1315
TatI	WGTACW	1 cut(s)	784
TauI	GCSGC	2 cut(s)	44, 312
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	479, 552
Tru9I	TTAA	2 cut(s)	479, 552
TseFI	GTSAC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	500, 774, 903, 1160
TspGWI	ACGGA	2 cut(s)	70, 386
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	591
XmiI	GTMKAC	2 cut(s)	604, 1127
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	2 cut(s)	267, 515
ZrmI	AGTACT	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.