pycom520g00950

Cleft lip and palate transmembrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
OG0011964
Physical Location & Seq
Reverse (-)
714451 .. 718453
4003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGATACCAATTAATGAGACGGTGAAAGATTTGCCTCTAAATCTGGAGATAGATCCCATAAGCATGACCAAGTGGCAACTATTCTTGCAGATTGATCAGTCTTTCCAGATTCACCGTAGTTATGGAAGCATGCTTGAGGGTGAGGCTGATGAACTGAAGAGAGTATTCTTGGAAGGAAATCCTTACCTCCTTGGAATCACAATGGTTGTTTCTTTGCTTCATTCAGTGTTTGACTTCTTGGCATTCAAGAACGATATTCAATTTTGGAACAAAAACAAATCTATGGAAGGACTGTCTGCAAAGTCTGTTATCGTGAGCTTTGTATGTCAGCTCATTGTCTTCCTCTATCTACTTGATAATGATACATCGTGGATGATACTTGCAAGTTCTGGAATTGGCTGCTGCATCGAGTTTTGGAAAATTGGGAAGGCCATGCACATAGAGATTGATAGAACTGGGAGGATACCTATGCTGAGGTTCCGTGACCGTGAGTCATATGCAGGGAATAGGACAAAAGAATATGATGATATGGCGATGAAGTATTTGTCGTATCTGCTCTTCTTCCTTGTTGCATGCTCTGCGATTTACTCACTTAAGTATGAGCGTCACAAGAGCTGGTATTCTTGGATTCTCTCTTCGCTCACAAGCTGTGTCTACATGTTTGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLPTM1

Protein Analysis

224

Amino Acids

26.0

Weight (kDa)

6.09

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLPTM1 PF05602 1 - 200 6.8e-97 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08500 AT5G08500 AT5G23575
fragaria_vesca FvH4_1g25770
malus_domestica MD15G1140200.v1.1
prunus_persica Prupe.4G286100_v2.0.a1
pyrus_communis pycom15g12670 pycom520g00950
rosa_chinensis RchiOBHm_Chr3g0484771
rosa_laevigata RLG00000023204
rosa_multiflora Rmu_sc0001689.1_g000011 Rmu_sc0006653.1_g000006 Rmu_sc0020526.1_g000001
rosa_roxburghii Rroxscaffold_6G00397450
rosa_rugosa Rorug03G0213800
rosa_samantha Rh3BG299200 Rh3CG297000 Rh3DG292800
rosa_wichuraiana Rw3G023560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 654
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 176
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 2 cut(s) 247, 260
AhdI GACNNNNNGTC 1 cut(s) 490
AluBI AGCT 4 cut(s) 318, 331, 615, 648
AluI AGCT 4 cut(s) 318, 331, 615, 648
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 399, 402
AseI ATTAAT 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 34, 104, 152
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbsI GAAGAC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 386, 389
BciVI GTATCC 1 cut(s) 456
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 2 cut(s) 400, 403
BlsI GCNGC 2 cut(s) 401, 404
BmeRI GACNNNNNGTC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 479
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 460
BseXI GCAGC 2 cut(s) 386, 389
BshFI GGCC 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 52, 94
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 479
BspPI GGATC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 563
BspTI CTTAAG 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 672
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 52, 94
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 4 cut(s) 22, 116, 294, 488
Bst6I CTCTTC 3 cut(s) 152, 563, 640
BstAFI CTTAAG 1 cut(s) 593
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 131, 574
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 1 cut(s) 378
BstKTI GATC 2 cut(s) 55, 97
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 52, 94
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNSI RCATGY 3 cut(s) 133, 576, 661
BstV1I GCAGC 2 cut(s) 386, 389
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 131, 574
CseI GACGC 1 cut(s) 593
CviAII CATG 5 cut(s) 64, 130, 433, 573, 658
CviJI RGCY 7 cut(s) 146, 318, 331, 399, 431, 615, 648
CviKI_1 RGCY 7 cut(s) 146, 318, 331, 399, 431, 615, 648
DdeI CTNAG 1 cut(s) 473
DpnI GATC 2 cut(s) 54, 96
DpnII GATC 2 cut(s) 52, 94
DriI GACNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 3 cut(s) 152, 563, 640
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 3 cut(s) 152, 563, 640
Eco130I CCWWGG 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 5 cut(s) 67, 133, 436, 576, 661
FatI CATG 5 cut(s) 63, 129, 432, 572, 657
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 400, 403
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 400, 403
GluI GCNGC 2 cut(s) 400, 403
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 431
HgaI GACGC 1 cut(s) 593
Hin1II CATG 5 cut(s) 67, 133, 436, 576, 661
HinfI GANTC 4 cut(s) 109, 195, 491, 628
HphI GGTGA 3 cut(s) 34, 104, 152
Hpy166II GTNNAC 1 cut(s) 655
Hpy188III TCNNGA 5 cut(s) 44, 106, 247, 313, 390
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 3 cut(s) 167, 281, 421
HpyCH4III ACNGT 4 cut(s) 22, 116, 294, 488
HpyCH4V TGCA 8 cut(s) 88, 299, 383, 405, 436, 500, 572, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 1 cut(s) 473
Hsp92II CATG 5 cut(s) 67, 133, 436, 576, 661
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 52, 94
LguI GCTCTTC 1 cut(s) 563
LpnPI CCDG 6 cut(s) 29, 119, 375, 441, 486, 601
Lsp1109I GCAGC 2 cut(s) 386, 389
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 482, 605
MalI GATC 2 cut(s) 54, 96
MboI GATC 2 cut(s) 52, 94
MboII GAAGA 5 cut(s) 169, 331, 550, 553, 627
MflI RGATCY 1 cut(s) 52
MluCI AATT 4 cut(s) 9, 260, 393, 420
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 7 cut(s) 45, 130, 136, 197, 353, 453, 468
MseI TTAA 2 cut(s) 12, 594
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 578
NdeI CATATG 1 cut(s) 496
NdeII GATC 2 cut(s) 52, 94
NlaIII CATG 5 cut(s) 67, 133, 436, 576, 661
NlaIV GGNNCC 1 cut(s) 479
NmuCI GTSAC 2 cut(s) 482, 605
NspI RCATGY 3 cut(s) 133, 576, 661
PaeI GCATGC 2 cut(s) 133, 576
PciI ACATGT 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 563
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 109, 195, 628
PkrI GCNGC 2 cut(s) 401, 404
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PscI ACATGT 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 12, 594
SatI GCNGC 2 cut(s) 400, 403
Sau3AI GATC 2 cut(s) 52, 94
SchI GAGTC 1 cut(s) 500
SetI ASST 7 cut(s) 189, 320, 333, 469, 479, 617, 650
SfaNI GCATC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 134, 593
SmoI CTYRAG 2 cut(s) 134, 593
SphI GCATGC 2 cut(s) 133, 576
Sse9I AATT 4 cut(s) 9, 260, 393, 420
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 4 cut(s) 22, 116, 294, 488
TaqI TCGA 1 cut(s) 408
TasI AATT 4 cut(s) 9, 260, 393, 420
TfiI GAWTC 3 cut(s) 109, 195, 628
Tru1I TTAA 2 cut(s) 12, 594
Tru9I TTAA 2 cut(s) 12, 594
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 482, 605
TseI GCWGC 2 cut(s) 399, 402
Tsp45I GTSAC 2 cut(s) 482, 605
TspDTI ATGAA 3 cut(s) 165, 209, 551
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 1 cut(s) 231
Vha464I CTTAAG 1 cut(s) 593
VspI ATTAAT 1 cut(s) 12
XceI RCATGY 3 cut(s) 133, 576, 661
XmiI GTMKAC 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.