Rh3CG297000

Cleft lip and palate transmembrane protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
30419619 .. 30427938
8320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG297000.1

Sequence Viewer

Length: 1500 bp
ATGGCGCCGCCAGCGCCAGTCGCCGCCGCAGCCGCAGCAGGTGGGCAAGTCCAAGCCGGACCGCAGCAAGGAGGGATTGGTCAGAGCATCGGTGGAATCATACGGATGGCTGTGATTTGGTACTTCGCTTCCAAATTCTTTTCCTCCTCCAAAAAGCCTTCTGATCCTTCTCAGCTCATCTCCAATATCTTCCCCAAGGGTGAACCACTGGATATGTGGTTCTATATAACTGAACATGAGAAGTTCAATGAATTCGGAAGTGAAAGCGCGCTTGTATGGCATGAAACTAATATCCCCTACGCTACCTATGGGCCGGAGAGTACCAGGACTCTGTCTATGAAGTACTATCCATCTGAGGCATTAAAGCACAATGGGAGTCTCTATGCTCATGTTTTCTTTGCCCGCTCTGGTTACCCTGCGGACCCAAATGATCCAGAGTATCTGCCTCTAGCTGCGTTTGGAAAGACGCATGTCATTGTGACACACTTGCCCAAGTCGAAAGCTGGTAAAAAGAGGAGTTTGCTGGGGGCCTCAAAAGACACTGAAGAGGATGTAAAAATTGCTGAGGTGGTTGATGATACTCAAGGTGATTCTGAGGATAATGGTCCTGAGGAGTGGGTATCATACTTTAAACCAAATGTTACTGTCAATTTGGTTGATGATTTTACCCGATATCCTCATAATGCTGTTCCACCCAATGTTGCTCCTTACTTGAATGTGGAGCCTAATTCTGGCAATTACTTTCCAACCATTTTCTTCAACGAATTTTGGTTACTTCGAGATAAGTTGATACCAATTAATGAAACAGTGAAAGAATTGCAGCTGAATCTGGAAGTAGGTCCCATAAGCATGACTAAGTGGCAACTATTCCTACAGATTGATCAGTCTTTCCAAATTCACCGTAGTTATGGAAGCATGCTCGAGGGTGAGGCTGATGAACTGAAGAGAGTATTCTTGGAAGGAAATCCTTACCTCCTGGCAATCACTATGGCTGTTTCTGTACTTCATTCAGTGTTTGACTTCTTGGCATTCAAAAATGATATTCAGTTTTGGAACAAAAATAAGTCTATGGAAGGGCTGTCTGCAAAGTCTGTTGTCGTGAGCTTCATAAGCCAGTTCATTATCTTCCTCTATCTACTTGACAATGACACTTCATGGATGATACTTGCAAGCTCTGGAGTTGGCTGCTGCATTGAATTTTGGAAAATTGGGAAGGCCATGCACATAGAGATTGATAGAAGTGGGAAGATACCAATGTTGAGATTCCGAGATCGTGAGTCATATGCAGGGAATAAGACAAAGGAATATGATGATATGGCAATGAAATATTTGACGTATGTGCTCTTGTTCCTTGTCGCATGCTCCTCTATTTATTCACTCAAATACGAGCAGCACAAGAGCTGGTATTCTTGGATTCTCTCTTCATTCACGAGCTGTGTCTACATGTTCGGTAAGCTCTTAGTTCTGCTCACTGCTCCTTGTACTCTGGGTACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

56.27

Weight (kDa)

5.73

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLPTM1 PF05602 33 - 462 1.3e-150 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011964)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 1440
AccII CGCG 1 cut(s) 269
AciI CCGC 7 cut(s) 8, 24, 27, 33, 62, 403, 419
AclWI GGATC 2 cut(s) 158, 425
AcsI RAATTY 5 cut(s) 134, 251, 764, 894, 1196
AcuI CTGAAG 2 cut(s) 564, 962
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 122, 322, 344, 1002, 1483, 1492
AfiI CCNNNNNNNGG 2 cut(s) 68, 731
AflIII ACRYGT 1 cut(s) 1443
AgsI TTSAA 5 cut(s) 247, 715, 760, 1033, 1196
AjnI CCWGG 2 cut(s) 323, 975
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 9 cut(s) 175, 452, 503, 823, 1104, 1173, 1401, 1434, 1456
AluI AGCT 9 cut(s) 175, 452, 503, 823, 1104, 1173, 1401, 1434, 1456
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 158, 425
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 3 cut(s) 311, 528, 1215
ApeKI GCWGC 8 cut(s) 29, 35, 64, 452, 820, 1185, 1188, 1390
ApoI RAATTY 5 cut(s) 134, 251, 764, 894, 1196
AseI ATTAAT 1 cut(s) 798
AspLEI GCGC 4 cut(s) 7, 16, 269, 271
AspS9I GGNCC 6 cut(s) 59, 311, 421, 528, 605, 839
AsuHPI GGTGA 4 cut(s) 212, 599, 890, 938
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 4 cut(s) 59, 421, 605, 839
AxyI CCTNAGG 1 cut(s) 609
BaeI ACNNNNGTAYC 2 cut(s) 1241, 1274
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 1429
Bbv12I GWGCWC 1 cut(s) 1344
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 8 cut(s) 41, 47, 76, 439, 832, 1172, 1175, 1402
BccI CCATC 2 cut(s) 100, 358
BciT130I CCWGG 2 cut(s) 325, 977
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 2 cut(s) 8, 17
BfuAI ACCTGC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 325, 977
Bme18I GGWCC 4 cut(s) 59, 421, 605, 839
BmeT110I CYCGRG 1 cut(s) 920
BmgT120I GGNCC 6 cut(s) 59, 311, 421, 528, 605, 839
BmiI GGNNCC 5 cut(s) 6, 423, 529, 723, 841
BmrFI CCNGG 2 cut(s) 325, 977
BmsI GCATC 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 1197
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 731
Bse1I ACTGG 3 cut(s) 17, 213, 1114
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 1326
BseBI CCWGG 2 cut(s) 325, 977
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 3 cut(s) 111, 556, 1164
BseLI CCNNNNNNNGG 2 cut(s) 68, 731
BseMI GCAATG 1 cut(s) 1326
BseMII CTCAG 5 cut(s) 185, 345, 555, 585, 600
BseNI ACTGG 3 cut(s) 17, 213, 1114
BsePI GCGCGC 1 cut(s) 267
BseRI GAGGAG 4 cut(s) 136, 529, 626, 1354
BseXI GCAGC 8 cut(s) 41, 47, 76, 439, 832, 1172, 1175, 1402
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 3 cut(s) 313, 530, 1217
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 1344
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 2 cut(s) 57, 314
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 2 cut(s) 68, 731
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 1028
BsnI GGCC 3 cut(s) 313, 530, 1217
BsoBI CYCGRG 1 cut(s) 920
Bsp1286I GDGCHC 1 cut(s) 1344
Bsp143I GATC 4 cut(s) 163, 430, 880, 1270
BspACI CCGC 7 cut(s) 8, 24, 27, 33, 62, 403, 419
BspANI GGCC 3 cut(s) 313, 530, 1217
BspCNI CTCAG 5 cut(s) 184, 346, 556, 586, 601
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 5 cut(s) 6, 423, 529, 723, 841
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 158, 425
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 1326
BsrI ACTGG 3 cut(s) 17, 213, 1114
BssECI CCNNGG 1 cut(s) 195
BssHII GCGCGC 1 cut(s) 267
BssMI GATC 4 cut(s) 163, 430, 880, 1270
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1429
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 1429
Bst2UI CCWGG 2 cut(s) 325, 977
Bst4CI ACNGT 3 cut(s) 646, 808, 902
Bst6I CTCTTC 3 cut(s) 540, 938, 1426
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 6 cut(s) 12, 269, 403, 917, 1171, 1360
BstDEI CTNAG 7 cut(s) 171, 354, 564, 594, 609, 855, 1459
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 3 cut(s) 111, 556, 1164
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 2 cut(s) 8, 17
BstHHI GCGC 4 cut(s) 7, 16, 269, 271
BstKTI GATC 4 cut(s) 166, 433, 883, 1273
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 163, 430, 880, 1270
BstMWI GCNNNNNNNGC 8 cut(s) 11, 13, 20, 29, 32, 35, 277, 1110
BstNI CCWGG 2 cut(s) 325, 977
BstNSI RCATGY 4 cut(s) 473, 919, 1362, 1447
BstPAI GACNNNNGTC 1 cut(s) 470
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 323, 975
BstSFI CTRYAG 1 cut(s) 872
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 8 cut(s) 41, 47, 76, 439, 832, 1172, 1175, 1402
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 3 cut(s) 313, 530, 1217
BtsCI GGATG 3 cut(s) 111, 556, 1164
BtsI GCAGTG 1 cut(s) 1470
BtsIMutI CAGTG 5 cut(s) 206, 540, 813, 1017, 1470
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 6 cut(s) 12, 269, 403, 917, 1171, 1360
CfoI GCGC 4 cut(s) 7, 16, 269, 271
Cfr13I GGNCC 6 cut(s) 59, 311, 421, 528, 605, 839
CpoI CGGWCCG 1 cut(s) 59
CseI GACGC 1 cut(s) 475
Csp6I GTAC 6 cut(s) 121, 321, 343, 1001, 1482, 1491
CspI CGGWCCG 1 cut(s) 59
CviQI GTAC 6 cut(s) 121, 321, 343, 1001, 1482, 1491
DdeI CTNAG 7 cut(s) 171, 354, 564, 594, 609, 855, 1459
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 165, 432, 882, 1272
DpnII GATC 4 cut(s) 163, 430, 880, 1270
DraI TTTAAA 1 cut(s) 631
Eam1104I CTCTTC 3 cut(s) 540, 938, 1426
EarI CTCTTC 3 cut(s) 540, 938, 1426
Eco130I CCWWGG 1 cut(s) 195
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 4 cut(s) 59, 421, 605, 839
Eco57I CTGAAG 2 cut(s) 564, 962
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 920
Eco91I GGTNACC 1 cut(s) 410
EcoO109I RGGNCCY 2 cut(s) 528, 839
EcoO65I GGTNACC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 323, 975
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 195
FaqI GGGAC 1 cut(s) 825
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 1282
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 1440
FokI GGATG 3 cut(s) 118, 563, 1171
FspBI CTAG 1 cut(s) 449
GlaI GCGC 4 cut(s) 6, 15, 268, 270
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 1197
HaeII RGCGCY 2 cut(s) 8, 17
HaeIII GGCC 3 cut(s) 313, 530, 1217
HapII CCGG 2 cut(s) 57, 314
HgaI GACGC 1 cut(s) 475
HhaI GCGC 4 cut(s) 7, 16, 269, 271
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 4 cut(s) 5, 14, 267, 269
HinP1I GCGC 4 cut(s) 5, 14, 267, 269
HinfI GANTC 8 cut(s) 96, 328, 376, 590, 826, 1263, 1277, 1414
HpaII CCGG 2 cut(s) 57, 314
HphI GGTGA 4 cut(s) 212, 599, 890, 938
Hpy166II GTNNAC 2 cut(s) 203, 1441
Hpy188I TCNGA 6 cut(s) 84, 163, 257, 355, 595, 1268
Hpy188III TCNNGA 8 cut(s) 434, 608, 779, 830, 1099, 1176, 1274, 1429
Hpy8I GTNNAC 2 cut(s) 203, 1441
HpyAV CCTTC 5 cut(s) 168, 177, 953, 1067, 1207
HpyCH4III ACNGT 3 cut(s) 646, 808, 902
HpyCH4IV ACGT 1 cut(s) 1334
HpyCH4V TGCA 6 cut(s) 820, 1085, 1169, 1191, 1222, 1286
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 13, 20, 29, 32, 35, 277, 1110
HpyF3I CTNAG 7 cut(s) 171, 354, 564, 594, 609, 855, 1459
HpySE526I ACGT 1 cut(s) 1334
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 4 cut(s) 5, 14, 267, 269
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 4 cut(s) 163, 430, 880, 1270
LmnI GCTCC 4 cut(s) 709, 721, 1367, 1480
Lsp1109I GCAGC 8 cut(s) 41, 47, 76, 439, 832, 1172, 1175, 1402
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 1334
MaeIII GTNAC 4 cut(s) 410, 478, 640, 771
MalI GATC 4 cut(s) 165, 432, 882, 1272
MbiI CCGCTC 1 cut(s) 405
MboI GATC 4 cut(s) 163, 430, 880, 1270
MboII GAAGA 7 cut(s) 181, 557, 748, 955, 1117, 1258, 1413
MhlI GDGCHC 1 cut(s) 1344
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 322, 385, 1286
MmeI TCCRAC 1 cut(s) 770
MseI TTAA 3 cut(s) 362, 630, 798
MslI CAYNNNNRTG 2 cut(s) 104, 848
MspA1I CMGCKG 1 cut(s) 823
MspI CCGG 2 cut(s) 57, 314
MspR9I CCNGG 2 cut(s) 325, 977
Mva1269I GAATGC 1 cut(s) 1028
MvaI CCWGG 2 cut(s) 325, 977
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 8 cut(s) 11, 13, 20, 29, 32, 35, 277, 1110
NarI GGCGCC 1 cut(s) 5
NdeI CATATG 1 cut(s) 1282
NdeII GATC 4 cut(s) 163, 430, 880, 1270
NlaIV GGNNCC 5 cut(s) 6, 423, 529, 723, 841
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 4 cut(s) 473, 919, 1362, 1447
PaeI GCATGC 2 cut(s) 919, 1362
PaeR7I CTCGAG 1 cut(s) 920
PaqCI CACCTGC 1 cut(s) 29
PauI GCGCGC 1 cut(s) 267
PciI ACATGT 1 cut(s) 1443
PctI GAATGC 1 cut(s) 1028
PfeI GAWTC 5 cut(s) 96, 590, 826, 1263, 1414
PflFI GACNNNGTC 1 cut(s) 331
PleI GAGTC 3 cut(s) 322, 384, 1285
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 322, 384, 1285
PpuMI RGGWCCY 1 cut(s) 839
PscI ACATGT 1 cut(s) 1443
PshAI GACNNNNGTC 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 798
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 323, 975
PspEI GGTNACC 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 2 cut(s) 323, 975
PspN4I GGNNCC 5 cut(s) 6, 423, 529, 723, 841
PspPI GGNCC 6 cut(s) 59, 311, 421, 528, 605, 839
PspPPI RGGWCCY 1 cut(s) 839
PspXI VCTCGAGB 1 cut(s) 920
PsyI GACNNNGTC 1 cut(s) 331
PteI GCGCGC 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 6 cut(s) 122, 322, 344, 1002, 1483, 1492
RsaNI GTAC 6 cut(s) 121, 321, 343, 1001, 1482, 1491
RseI CAYNNNNRTG 2 cut(s) 104, 848
Rsr2I CGGWCCG 1 cut(s) 59
RsrII CGGWCCG 1 cut(s) 59
SaqAI TTAA 3 cut(s) 362, 630, 798
Sau3AI GATC 4 cut(s) 163, 430, 880, 1270
Sau96I GGNCC 6 cut(s) 59, 311, 421, 528, 605, 839
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 3 cut(s) 322, 385, 1286
ScrFI CCNGG 2 cut(s) 325, 977
SduI GDGCHC 1 cut(s) 1344
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 872
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 920
SinI GGWCC 4 cut(s) 59, 421, 605, 839
SlaI CTCGAG 1 cut(s) 920
SmiMI CAYNNNNRTG 2 cut(s) 104, 848
SmlI CTYRAG 2 cut(s) 582, 920
SmoI CTYRAG 2 cut(s) 582, 920
SphI GCATGC 2 cut(s) 919, 1362
SsiI CCGC 7 cut(s) 8, 24, 27, 33, 62, 403, 419
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 1328
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 323, 975
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 646, 808, 902
TaiI ACGT 1 cut(s) 1337
TaqI TCGA 3 cut(s) 497, 778, 921
TatI WGTACW 3 cut(s) 342, 1000, 1481
TauI GCSGC 4 cut(s) 10, 26, 29, 35
TfiI GAWTC 5 cut(s) 96, 590, 826, 1263, 1414
Tru1I TTAA 3 cut(s) 362, 630, 798
Tru9I TTAA 3 cut(s) 362, 630, 798
TscAI CASTG 5 cut(s) 213, 547, 813, 1017, 1477
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 8 cut(s) 29, 35, 64, 452, 820, 1185, 1188, 1390
Tsp45I GTSAC 1 cut(s) 478
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 5 cut(s) 213, 547, 813, 1017, 1477
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 4 cut(s) 59, 421, 605, 839
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 5 cut(s) 134, 251, 764, 894, 1196
XceI RCATGY 4 cut(s) 473, 919, 1362, 1447
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 1440
XspI CTAG 1 cut(s) 449
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.