Rroxscaffold_6G00397450

Cleft lip and palate transmembrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011964
Physical Location & Seq
Forward (+)
19137036 .. 19145402
8367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397450.1

Sequence Viewer

Length: 1587 bp
ATGTGGTTCTATATTACTGAACATGAGAAGTTCAATGAATTCGGGAGTGAAAGTGCGCTTGTATGGCATGAAACTAATATCCCCTACGCTACCTATGGGCCGGAGAGTACCAGGACTTTGTCTATGAAGTACTATCCATCTGAGGCATTAAAGCACAATGGGAGTCTCTATGCTCATGTTTTCTTTGCCCGCTCTGGTTACCCTGCGGACCCAAATGATCCAGAGTATCTGCCTCAAGCTGCGTTTGGAAAGACGCATGCCCTTGTGACACACTTGCCCAAGTCAAAAGCTGGTAAAAAGAGGAGTTTGCTGGGGGACTCAAAGGACTCTGAAGAGGATGTAAAAATTGCTGAGGTGGTTGATGATACTCAGGGTGATTCTGAGGATAAGGATAATGGTCCTGAGGAGTGGGTATCATACTTTAAACCAAATGTTACTGTCAATTTGGTTGATGATTTTACCCGATACCCTAATAATACTGTTCCACCCAATGTTGCTCCTTACTTGAATGTGGAGCCTAGTTCTGGCAATTACTTTCCAACCATTTTCTTCAACGAATTTTGGTTACTTCGAGATAAGTTGATACCAATTAATGAAACAGTGAAAGAATTGCAGCTGAATCTGGAAGTAGGTCCCATAAGCATGACTAAGTGGCAACTATTCCTACAGATTGATCAGTCTTTCCAAATTCACCGTAGTTATGGAAGCATGCTCGAGGGTGAGGCTGATGAACTGAAGAGAGTATTTTTGGAAGGAAATCCTTACCTGCTGGCAATCACAATGGCTGTTTCTGTACTTCATTCAGTGTTTGACTTCTTGGCATTCAAAAACGATATTCAGTTTTGGAACAAAAATAAGTCTATGGAAGGGCTGTCTGCGAAGTCCGTTGTTGTGAGCTTCATAAGCCAGTTCATTATCTTCCTCTATCTGCTTGACAATGACACTTCATGGATGATACTTGCAAGCTCTGGAGTTGGCTGCTGCATTGAATTTTGGAAAATTGGGAAGGCCATGCACATAGAGATTGATAGAAGTGGGAAGATACCAATGTTGAGGTTCCGAGATCGTGAGTCATATGCAGGGAATAAGACAAAGGAATATGATGATATCGCAATGAAATATTTGACGTATGTGCTTTTGTTCCTTGTTGCATGCTCCTCTATTTATTCACTCAAGTACGAGCAGCACAAGAGCTGGTATTCTTGGATTCTCTCTTCATTCACGAGCTGTGTCTACATGTTCGGTTTTATTATGATGTGCCCTCAATTGTTCATTAACTATAAGCTGAAGTCGGTAGCTCATCTACCCTGGAGACAGATGACTTACAAGTTCCTCAACACCATCATCGATGATCTGTTTGCCTTTGTCATAAAAATGCCAATGTTGCATCGCCTTTCTGTGTTCCGTGATGATGTCATATTTCTGATATACATATACCAGAGATGGGTCTATCCCGTGGACAAAAAACGTGTAAATGAGTTTGGTTTCAGTGGTGAAGCCGATCAGGTCACCGATCAGGTCATTGAACAGGTCACTGATGGTACAGATGACACTGCAGTTAAGCAAGAAGAGAAGAAAACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLPTM1

Protein Analysis

528

Amino Acids

61.18

Weight (kDa)

5.49

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLPTM1 PF05602 1 - 393 1.9e-144 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08500 AT5G08500 AT5G23575
fragaria_vesca FvH4_1g25770
malus_domestica MD15G1140200.v1.1
prunus_persica Prupe.4G286100_v2.0.a1
pyrus_communis pycom15g12670 pycom520g00950
rosa_chinensis RchiOBHm_Chr3g0484771
rosa_laevigata RLG00000023204
rosa_multiflora Rmu_sc0001689.1_g000011 Rmu_sc0006653.1_g000006 Rmu_sc0020526.1_g000001
rosa_roxburghii Rroxscaffold_6G00397450
rosa_rugosa Rorug03G0213800
rosa_samantha Rh3BG299200 Rh3CG297000 Rh3DG292800
rosa_wichuraiana Rw3G023560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 774
AccBSI CCGCTC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 1233
AciI CCGC 2 cut(s) 190, 206
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 4 cut(s) 38, 557, 687, 989
AcuI CTGAAG 3 cut(s) 351, 755, 1307
AfaI GTAC 5 cut(s) 109, 131, 795, 1178, 1543
AfiI CCNNNNNNNGG 2 cut(s) 524, 1444
AflIII ACRYGT 2 cut(s) 1236, 1468
AgsI TTSAA 6 cut(s) 34, 508, 553, 826, 989, 1526
AjnI CCWGG 2 cut(s) 110, 1307
AluBI AGCT 9 cut(s) 239, 290, 616, 897, 966, 1194, 1227, 1285, 1298
AluI AGCT 9 cut(s) 239, 290, 616, 897, 966, 1194, 1227, 1285, 1298
Alw26I GTCTC 2 cut(s) 170, 1306
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 2 cut(s) 98, 1008
ApeKI GCWGC 5 cut(s) 239, 613, 978, 981, 1183
ApoI RAATTY 4 cut(s) 38, 557, 687, 989
AseI ATTAAT 1 cut(s) 591
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 98, 208, 398, 632
AsuHPI GGTGA 5 cut(s) 386, 683, 731, 1501, 1505
AvaI CYCGRG 1 cut(s) 713
AvaII GGWCC 3 cut(s) 208, 398, 632
AxyI CCTNAGG 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 1262
BaeI ACNNNNGTAYC 2 cut(s) 1034, 1067
BauI CACGAG 1 cut(s) 1222
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 226, 625, 965, 968, 1195
BccI CCATC 4 cut(s) 145, 1349, 1437, 1532
BciT130I CCWGG 2 cut(s) 112, 1309
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 2 cut(s) 170, 1306
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 2 cut(s) 665, 1554
BfuAI ACCTGC 1 cut(s) 774
BisI GCNGC 5 cut(s) 240, 614, 979, 982, 1184
BlsI GCNGC 5 cut(s) 241, 615, 980, 983, 1185
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 112, 1309
Bme18I GGWCC 3 cut(s) 208, 398, 632
BmeT110I CYCGRG 1 cut(s) 713
BmgT120I GGNCC 4 cut(s) 98, 208, 398, 632
BmiI GGNNCC 4 cut(s) 210, 516, 634, 1058
BmrFI CCNGG 2 cut(s) 112, 1309
BmsI GCATC 1 cut(s) 1396
BpmI CTGGAG 2 cut(s) 990, 1330
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 219, 1157
Bsa29I ATCGAT 1 cut(s) 1347
BsaJI CCNNGG 2 cut(s) 1307, 1455
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 1444
Bse1I ACTGG 1 cut(s) 907
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 1119
BseBI CCWGG 2 cut(s) 112, 1309
BseCI ATCGAT 1 cut(s) 1347
BseDI CCNNGG 2 cut(s) 1307, 1455
BseGI GGATG 2 cut(s) 343, 957
BseLI CCNNNNNNNGG 2 cut(s) 524, 1444
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 5 cut(s) 132, 342, 372, 383, 393
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 3 cut(s) 316, 419, 1147
BseSI GKGCMC 1 cut(s) 1262
BseXI GCAGC 5 cut(s) 226, 625, 965, 968, 1195
BseYI CCCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 100, 1010
BshVI ATCGAT 1 cut(s) 1347
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 329, 618
BslI CCNNNNNNNGG 2 cut(s) 524, 1444
BsmAI GTCTC 2 cut(s) 170, 1306
BsmFI GGGAC 2 cut(s) 329, 618
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 2 cut(s) 100, 1010
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 1262
Bsp143I GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
BspACI CCGC 2 cut(s) 190, 206
BspANI GGCC 2 cut(s) 100, 1010
BspCNI CTCAG 5 cut(s) 133, 343, 373, 382, 394
BspDI ATCGAT 1 cut(s) 1347
BspLI GGNNCC 4 cut(s) 210, 516, 634, 1058
BspMAI CTGCAG 1 cut(s) 1558
BspMI ACCTGC 1 cut(s) 774
BspPI GGATC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 1119
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 2 cut(s) 1307, 1455
BssMI GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
BssSI CACGAG 1 cut(s) 1222
Bst2BI CACGAG 1 cut(s) 1222
Bst2UI CCWGG 2 cut(s) 112, 1309
Bst4CI ACNGT 4 cut(s) 439, 481, 601, 695
Bst6I CTCTTC 4 cut(s) 327, 731, 1219, 1563
BstC8I GCNNGC 6 cut(s) 190, 258, 710, 771, 964, 1153
BstDEI CTNAG 6 cut(s) 141, 351, 369, 381, 402, 648
BstDSI CCRYGG 1 cut(s) 1455
BstEII GGTNACC 2 cut(s) 197, 1507
BstF5I GGATG 2 cut(s) 343, 957
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 6 cut(s) 220, 676, 1066, 1354, 1504, 1516
BstMAI GTCTC 2 cut(s) 170, 1306
BstMBI GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
BstMWI GCNNNNNNNGC 3 cut(s) 64, 903, 1384
BstNI CCWGG 2 cut(s) 112, 1309
BstNSI RCATGY 4 cut(s) 260, 712, 1155, 1240
BstPI GGTNACC 2 cut(s) 197, 1507
BstSCI CCNGG 2 cut(s) 110, 1307
BstSFI CTRYAG 2 cut(s) 665, 1554
BstSLI GKGCMC 1 cut(s) 1262
BstV1I GCAGC 5 cut(s) 226, 625, 965, 968, 1195
Bsu15I ATCGAT 1 cut(s) 1347
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 2 cut(s) 100, 1010
BsuTUI ATCGAT 1 cut(s) 1347
BtgI CCRYGG 1 cut(s) 1455
BtgZI GCGATG 1 cut(s) 1373
BtsCI GGATG 2 cut(s) 343, 957
BtsI GCAGTG 1 cut(s) 1551
BtsIMutI CAGTG 5 cut(s) 606, 810, 1495, 1533, 1551
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 6 cut(s) 190, 258, 710, 771, 964, 1153
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 98, 208, 398, 632
ClaI ATCGAT 1 cut(s) 1347
CseI GACGC 1 cut(s) 262
Csp6I GTAC 5 cut(s) 108, 130, 794, 1177, 1542
CviQI GTAC 5 cut(s) 108, 130, 794, 1177, 1542
DdeI CTNAG 6 cut(s) 141, 351, 369, 381, 402, 648
DpnI GATC 6 cut(s) 219, 675, 1065, 1353, 1503, 1515
DpnII GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 4 cut(s) 327, 731, 1219, 1563
EarI CTCTTC 4 cut(s) 327, 731, 1219, 1563
Eco32I GATATC 1 cut(s) 1108
Eco47I GGWCC 3 cut(s) 208, 398, 632
Eco57I CTGAAG 3 cut(s) 351, 755, 1307
Eco81I CCTNAGG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 713
Eco91I GGTNACC 2 cut(s) 197, 1507
EcoO109I RGGNCCY 1 cut(s) 632
EcoO65I GGTNACC 2 cut(s) 197, 1507
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 110, 1307
EcoRV GATATC 1 cut(s) 1108
FaqI GGGAC 2 cut(s) 329, 618
FauI CCCGC 1 cut(s) 197
FauNDI CATATG 1 cut(s) 1075
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 1 cut(s) 1233
Fnu4HI GCNGC 5 cut(s) 240, 614, 979, 982, 1184
FokI GGATG 2 cut(s) 350, 964
Fsp4HI GCNGC 5 cut(s) 240, 614, 979, 982, 1184
FspBI CTAG 1 cut(s) 519
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 240, 614, 979, 982, 1184
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 2 cut(s) 990, 1330
HaeIII GGCC 2 cut(s) 100, 1010
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 58
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 7 cut(s) 163, 317, 326, 377, 619, 1070, 1207
HpaII CCGG 1 cut(s) 101
HphI GGTGA 5 cut(s) 386, 683, 731, 1501, 1505
Hpy166II GTNNAC 2 cut(s) 1234, 1459
Hpy188I TCNGA 5 cut(s) 142, 331, 382, 1061, 1425
Hpy188III TCNNGA 8 cut(s) 43, 221, 401, 572, 623, 969, 1067, 1222
Hpy8I GTNNAC 2 cut(s) 1234, 1459
HpyAV CCTTC 3 cut(s) 746, 860, 1000
HpyCH4III ACNGT 4 cut(s) 439, 481, 601, 695
HpyCH4IV ACGT 2 cut(s) 1127, 1468
HpyCH4V TGCA 8 cut(s) 613, 962, 984, 1015, 1079, 1151, 1387, 1556
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 903, 1384
HpyF3I CTNAG 6 cut(s) 141, 351, 369, 381, 402, 648
HpySE526I ACGT 2 cut(s) 1127, 1468
HspAI GCGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
LmnI GCTCC 3 cut(s) 502, 514, 1160
Lsp1109I GCAGC 5 cut(s) 226, 625, 965, 968, 1195
LweI GCATC 1 cut(s) 1396
MaeI CTAG 1 cut(s) 519
MaeII ACGT 2 cut(s) 1127, 1468
MaeIII GTNAC 6 cut(s) 197, 265, 433, 564, 1507, 1531
MalI GATC 6 cut(s) 219, 675, 1065, 1353, 1503, 1515
MbiI CCGCTC 1 cut(s) 192
MboI GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
MboII GAAGA 8 cut(s) 344, 541, 748, 910, 1051, 1206, 1580, 1585
MfeI CAATTG 1 cut(s) 1265
MhlI GDGCHC 1 cut(s) 1262
MlyI GAGTC 4 cut(s) 172, 311, 320, 1079
MmeI TCCRAC 1 cut(s) 563
MseI TTAA 5 cut(s) 149, 423, 591, 1275, 1560
MslI CAYNNNNRTG 2 cut(s) 641, 1373
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 112, 1309
MunI CAATTG 1 cut(s) 1265
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 2 cut(s) 112, 1309
MwoI GCNNNNNNNGC 3 cut(s) 64, 903, 1384
NdeI CATATG 1 cut(s) 1075
NdeII GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
NlaIV GGNNCC 4 cut(s) 210, 516, 634, 1058
NmuCI GTSAC 3 cut(s) 265, 1507, 1531
NspI RCATGY 4 cut(s) 260, 712, 1155, 1240
PaeI GCATGC 3 cut(s) 260, 712, 1155
PaeR7I CTCGAG 1 cut(s) 713
PciI ACATGT 1 cut(s) 1236
PctI GAATGC 1 cut(s) 821
PfeI GAWTC 3 cut(s) 377, 619, 1207
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 5 cut(s) 241, 615, 980, 983, 1185
PleI GAGTC 4 cut(s) 171, 311, 320, 1078
PpsI GAGTC 4 cut(s) 171, 311, 320, 1078
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 1 cut(s) 1236
PshBI ATTAAT 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 110, 1307
PspEI GGTNACC 2 cut(s) 197, 1507
PspFI CCCAGC 1 cut(s) 310
PspGI CCWGG 2 cut(s) 110, 1307
PspN4I GGNNCC 4 cut(s) 210, 516, 634, 1058
PspPI GGNCC 4 cut(s) 98, 208, 398, 632
PspPPI RGGWCCY 1 cut(s) 632
PspXI VCTCGAGB 1 cut(s) 713
PstI CTGCAG 1 cut(s) 1558
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 5 cut(s) 109, 131, 795, 1178, 1543
RsaNI GTAC 5 cut(s) 108, 130, 794, 1177, 1542
RseI CAYNNNNRTG 2 cut(s) 641, 1373
SaqAI TTAA 5 cut(s) 149, 423, 591, 1275, 1560
SatI GCNGC 5 cut(s) 240, 614, 979, 982, 1184
Sau3AI GATC 6 cut(s) 217, 673, 1063, 1351, 1501, 1513
Sau96I GGNCC 4 cut(s) 98, 208, 398, 632
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 4 cut(s) 172, 311, 320, 1079
ScrFI CCNGG 2 cut(s) 112, 1309
SduI GDGCHC 1 cut(s) 1262
SfaNI GCATC 1 cut(s) 1396
SfcI CTRYAG 2 cut(s) 665, 1554
Sfr274I CTCGAG 1 cut(s) 713
SinI GGWCC 3 cut(s) 208, 398, 632
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 2 cut(s) 641, 1373
SmlI CTYRAG 3 cut(s) 234, 713, 1172
SmoI CTYRAG 3 cut(s) 234, 713, 1172
SphI GCATGC 3 cut(s) 260, 712, 1155
SsiI CCGC 2 cut(s) 190, 206
SspI AATATT 1 cut(s) 1121
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 110, 1307
TaaI ACNGT 4 cut(s) 439, 481, 601, 695
TaiI ACGT 2 cut(s) 1130, 1471
TaqI TCGA 3 cut(s) 571, 714, 1347
TatI WGTACW 2 cut(s) 129, 793
TfiI GAWTC 3 cut(s) 377, 619, 1207
Tru1I TTAA 5 cut(s) 149, 423, 591, 1275, 1560
Tru9I TTAA 5 cut(s) 149, 423, 591, 1275, 1560
TscAI CASTG 5 cut(s) 606, 810, 1495, 1540, 1558
TseFI GTSAC 3 cut(s) 265, 1507, 1531
TseI GCWGC 5 cut(s) 239, 613, 978, 981, 1183
Tsp45I GTSAC 3 cut(s) 265, 1507, 1531
TspGWI ACGGA 2 cut(s) 874, 1394
TspRI CASTG 5 cut(s) 606, 810, 1495, 1540, 1558
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 3 cut(s) 208, 398, 632
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 4 cut(s) 38, 557, 687, 989
XceI RCATGY 4 cut(s) 260, 712, 1155, 1240
XhoI CTCGAG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 1233
XspI CTAG 1 cut(s) 519
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.