Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000808

Orthogroup ID

OG0019273

Physical Location & Seq

Genomic Coordinates Forward (+)

28440 .. 30864

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAAGCGCATGATACTTATGCCAAGAATTTACTTAACATGATTGTGAAGTTTCCTTATATCCTAGCATCAAATTTATGCATGCAAATTAAGTGTGCACTCTCAATCCATATACATAAACAAGTTTTAATTCAAATAGATAAAGCCATGGTTTCGAAATTCCCCCTAGCCAAAAGGGGATTAGTTCCTCATACTCGCAAAATTACACCTAAAACGTTTCAGCAATTCCAAGTCGAATGGCATGCACAACTAGGGCTTTCCTTCTTCTTCCTTGCTGTTGCACAAGGTGTGGGTGATGGTTTTGGGGGTTATGAACATTGTATTCTTGTTGTATATGGAGGTTGCGGCAAGGGTTTTCTGAATAGCATAAAGGGTTCATCCGAATTTGTGGCTGAAAATATGTATAAATATTTATGGATTAGGGCCTTAGGGTTCGGTACAAGTAAGTTAAATCCACTTAATAGAGGGTTTGGCCCAATTAGCCTAATAAATCAGAATCCAAAAGGGAAAAGGTTTAGGAAATTCGTCCAAAATTGGATAAGGCTTGTAGAAATCATGTTTTTAGGTCCATTTGCAGCTATGATTACGGATAAGGTTGTTAGGATAAGTTTCCATATTTCTTGCTCTTTCCTTATCTTCTTTGTCTTGAACTTTCCTTTTATGATTTGTAGCATGTTCCTAATACAAGCTATCCATTTAGTGCCCAAAACTGCTCCAAAATGCACCAAAATGCACTTTCTTGAAATAATAACACAAATGCACAAGAACAAGCTAACTAAGTCGCATAAATATGCTCTTATCAAGCTAGGTTCTAGTTGGAAAAAATCAAAATGCTTGCAATTTGAGGTTGATGCTGATTACAGGTATATGAAAGTTTATGATCGTTTAATGGTGGAACTTAGCTTGGTAAATTGCATCATCAGCCCGGGGCAGGGACTTGCTTGTGTGCTGGGGAATTGCAAGAATTTAGAAAAGATTCACTTGGACATGTGTGTTGGCGATATAGTTGAGAAGGGCTTTGCTATCCCAGCGAAGAAGGAGGAAGAAATCACTGAAACAGAGAGGAAAATGATGAAGGAGAAAATCGTCAAAGATGTTAAGGCACTTGGAATTATCCAAGGGGCAGTTTCTAATCAAATCTTTTTGAGAATCGCCATCCAAGAGACTGCAAATGCTGCTTGGAATGTCTTGAAGCAAGAATTTGTAGGAGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

406

Amino Acids

45.97

Weight (kDa)

9.58

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019273)

Species	Orthologous Gene IDs
malus_domestica	MD04G1148800.v1.1 MD14G1241300.v1.1 MD15G1021400.v1.1 MD15G1071900.v1.1
pyrus_communis	pycom12g04970 pycom13g27840 pycom17g17800 pycom808g00060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AclI	AACGTT	1 cut(s)	215
AcsI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	931, 932
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	4 cut(s)	134, 649, 743, 1192
AluBI	AGCT	5 cut(s)	578, 689, 772, 805, 903
AluI	AGCT	5 cut(s)	578, 689, 772, 805, 903
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	1157
Alw44I	GTGCAC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	925
AoxI	GGCC	2 cut(s)	423, 472
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	575, 1175
ApoI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	423, 473, 566
AsuC2I	CCSGG	2 cut(s)	926, 927
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	925
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	427
BaeGI	GKGCMC	2 cut(s)	100, 705
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	587, 1162
BccI	CCATC	2 cut(s)	290, 1163
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcnI	CCSGG	2 cut(s)	926, 927
BcoDI	GTCTC	1 cut(s)	1157
BfaI	CTAG	5 cut(s)	65, 167, 251, 806, 813
BisI	GCNGC	3 cut(s)	346, 576, 1176
BlsI	GCNGC	3 cut(s)	347, 577, 1177
Bme1390I	CCNGG	2 cut(s)	926, 927
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	925
BmgT120I	GGNCC	3 cut(s)	423, 473, 566
BmrFI	CCNGG	2 cut(s)	926, 927
BmsI	GCATC	3 cut(s)	77, 841, 924
Bpu14I	TTCGAA	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	926, 927
BsaJI	CCNNGG	4 cut(s)	147, 925, 926, 1117
Bsc4I	CCNNNNNNNGG	2 cut(s)	931, 932
Bse21I	CCTNAGG	1 cut(s)	427
BseDI	CCNNGG	4 cut(s)	147, 925, 926, 1117
BseGI	GGATG	2 cut(s)	377, 1155
BseLI	CCNNNNNNNGG	2 cut(s)	931, 932
BseSI	GKGCMC	2 cut(s)	100, 705
BseXI	GCAGC	2 cut(s)	587, 1162
BseYI	CCCAGC	2 cut(s)	949, 1027
BshFI	GGCC	2 cut(s)	425, 474
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	925
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	931, 932
BsmAI	GTCTC	1 cut(s)	1157
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	2 cut(s)	425, 474
BsoBI	CYCGRG	1 cut(s)	925
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	100, 705
Bsp143I	GATC	1 cut(s)	880
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	425, 474
BspT104I	TTCGAA	1 cut(s)	155
BssECI	CCNNGG	4 cut(s)	147, 925, 926, 1117
BssMI	GATC	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	147, 1117
BstAPI	GCANNNNNTGC	1 cut(s)	1175
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	83, 243, 836
BstDEI	CTNAG	3 cut(s)	427, 777, 899
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	377, 1155
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	883
BstMAI	GTCTC	1 cut(s)	1157
BstMBI	GATC	1 cut(s)	880
BstMWI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
BstNSI	RCATGY	4 cut(s)	85, 245, 676, 991
BstSCI	CCNGG	2 cut(s)	924, 925
BstSLI	GKGCMC	2 cut(s)	100, 705
BstV1I	GCAGC	2 cut(s)	587, 1162
Bsu36I	CCTNAGG	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	425, 474
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	377, 1155
BtsIMutI	CAGTG	1 cut(s)	1050
Cac8I	GCNNGC	3 cut(s)	83, 243, 836
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	423, 473, 566
Cfr9I	CCCGGG	1 cut(s)	925
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	8 cut(s)	11, 40, 82, 148, 242, 556, 673, 988
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	3 cut(s)	427, 777, 899
DpnI	GATC	1 cut(s)	882
DpnII	GATC	1 cut(s)	880
DraIII	CACNNNGTG	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	147, 1117
Eco47I	GGWCC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	925
EcoO109I	RGGNCCY	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	147, 1117
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	147, 1117
FaeI	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
FalI	AAGNNNNNCTT	2 cut(s)	965, 997
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	8 cut(s)	10, 39, 81, 147, 241, 555, 672, 987
Fnu4HI	GCNGC	3 cut(s)	346, 576, 1176
FokI	GGATG	2 cut(s)	364, 1142
Fsp4HI	GCNGC	3 cut(s)	346, 576, 1176
FspBI	CTAG	5 cut(s)	65, 167, 251, 806, 813
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	346, 576, 1176
GsaI	CCCAGC	2 cut(s)	953, 1031
HaeIII	GGCC	2 cut(s)	425, 474
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	496, 976, 1149
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	360, 382, 495
Hpy188III	TCNNGA	3 cut(s)	646, 740, 1189
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	271, 1006, 1030, 1069
HpyCH4IV	ACGT	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
HpyF3I	CTNAG	3 cut(s)	427, 777, 899
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	880
LmnI	GCTCC	1 cut(s)	718
LpnPI	CCDG	5 cut(s)	847, 917, 935, 939, 1041
Lsp1109I	GCAGC	2 cut(s)	587, 1162
LweI	GCATC	3 cut(s)	77, 841, 924
MaeI	CTAG	5 cut(s)	65, 167, 251, 806, 813
MaeII	ACGT	1 cut(s)	215
MalI	GATC	1 cut(s)	882
MboI	GATC	1 cut(s)	880
MboII	GAAGA	5 cut(s)	256, 259, 628, 1045, 1055
MhlI	GDGCHC	2 cut(s)	100, 705
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	6 cut(s)	198, 332, 458, 838, 1033, 1056
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
MslI	CAYNNNNRTG	3 cut(s)	44, 728, 789
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	2 cut(s)	926, 927
MwoI	GCNNNNNNNGC	4 cut(s)	480, 921, 1028, 1175
NciI	CCSGG	2 cut(s)	926, 927
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	880
NlaIII	CATG	8 cut(s)	14, 43, 85, 151, 245, 559, 676, 991
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	4 cut(s)	85, 245, 676, 991
NspV	TTCGAA	1 cut(s)	155
PaeI	GCATGC	2 cut(s)	85, 245
PciI	ACATGT	1 cut(s)	987
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	496, 976, 1149
PkrI	GCNGC	3 cut(s)	347, 577, 1177
PscI	ACATGT	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	215
PspFI	CCCAGC	2 cut(s)	949, 1027
PspPI	GGNCC	3 cut(s)	423, 473, 566
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	3 cut(s)	44, 728, 789
SaqAI	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
SatI	GCNGC	3 cut(s)	346, 576, 1176
Sau3AI	GATC	1 cut(s)	880
Sau96I	GGNCC	3 cut(s)	423, 473, 566
ScrFI	CCNGG	2 cut(s)	926, 927
SduI	GDGCHC	2 cut(s)	100, 705
SfaNI	GCATC	3 cut(s)	77, 841, 924
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	1 cut(s)	566
SmaI	CCCGGG	1 cut(s)	927
SmiMI	CAYNNNNRTG	3 cut(s)	44, 728, 789
SphI	GCATGC	2 cut(s)	85, 245
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	410
SspMI	CTAG	5 cut(s)	65, 167, 251, 806, 813
StyD4I	CCNGG	2 cut(s)	924, 925
StyI	CCWWGG	2 cut(s)	147, 1117
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	155, 234
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	496, 976, 1149
Tru1I	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
Tru9I	TTAA	7 cut(s)	36, 90, 128, 449, 459, 887, 1098
TscAI	CASTG	1 cut(s)	1057
TseI	GCWGC	2 cut(s)	575, 1175
TspDTI	ATGAA	5 cut(s)	17, 327, 366, 884, 1088
TspGWI	ACGGA	1 cut(s)	602
TspMI	CCCGGG	1 cut(s)	925
TspRI	CASTG	1 cut(s)	1057
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	7 cut(s)	28, 73, 158, 383, 521, 964, 1199
XceI	RCATGY	4 cut(s)	85, 245, 676, 991
XmaI	CCCGGG	1 cut(s)	925
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	5 cut(s)	65, 167, 251, 806, 813
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.