Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Reverse (-)

6266011 .. 6269672

Gene Structure 3662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTGCGCTGTTAATGTTCCGGCATTGCAGACTGATGATCTGATTTTTCTTTGGGTCTCTGGACGTGTGATGGAGCTTGGACAACTGGGCGCACGTACCGGCCACTGGCTAAATCATAGCAAGGAGCATTGCCTCGTTGGAATAAAAGGGGATCCATTGGTAAATAGGAATATTGATGCTGATGTCATTGTTGCTGTGGTCAGAGAGACAGACCGTAAGCCAGGCGAGAGTAAGTTCAGGTTACATGATACAGACAAATTTGACTTAATGTACATGCATTCCTGTAGATGTATCCTTTGCTGGAGAGGATTAGTCCCAAGGACAAGGAAGCTGGAACTGTTTGCACGCATGCACAACACTCATGCAGGGTATGCTTTCTTGATCAATGGTTGGTTGGAAATTGTCAAGTCTCAAGTACAAAATGAAGCTTTCTGGTCTTTCATTTATTTGCCAACACATATCTTGGCCGTTGGTGGTTTCATCATTTTCTCTCAACTATCTTGTATCAGGAGGATGTCACTCGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAACGCTTGCGTGCACGGTTCAAGGCTGCTTACCCAGAGATGGAGGTGCAGCCAGCTTCCCCACCCAGAGCTTCTGCCATGGAAGTGGATTCAAATGCTGCCCAAACAAGAAGTCCAGTTTCCGAAGCAAAGCCCACAGCTGTGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCAGTTCCAGATGCACCTGCTTCTGAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

7.68

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	31 - 123	6.4e-11	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	2 cut(s)	100, 465
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	4 cut(s)	97, 272, 417, 543
AfiI	CCNNNNNNNGG	2 cut(s)	105, 595
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	577, 648
AjiI	CACGTC	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	6 cut(s)	76, 331, 428, 611, 626, 695
AluI	AGCT	6 cut(s)	76, 331, 428, 611, 626, 695
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	3 cut(s)	61, 200, 414
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	146, 159
AlwNI	CAGNNNCTG	2 cut(s)	713, 737
AoxI	GGCC	2 cut(s)	100, 465
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	5 cut(s)	581, 604, 653, 713, 716
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AspLEI	GCGC	2 cut(s)	8, 92
BaeGI	GKGCMC	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	5 cut(s)	568, 616, 640, 700, 703
BccI	CCATC	2 cut(s)	64, 589
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	3 cut(s)	61, 200, 414
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	2 cut(s)	283, 738
BfuAI	ACCTGC	1 cut(s)	763
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	5 cut(s)	582, 605, 654, 714, 717
BlsI	GCNGC	5 cut(s)	583, 606, 655, 715, 718
Bme1390I	CCNGG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	166, 739
BmuI	ACTGGG	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	317, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 595
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	90, 110, 671
Bse3DI	GCAATG	2 cut(s)	23, 127
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	317, 633
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	105, 595
BseMI	GCAATG	2 cut(s)	23, 127
BseMII	CTCAG	2 cut(s)	524, 753
BseNI	ACTGG	3 cut(s)	90, 110, 671
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	5 cut(s)	568, 616, 640, 700, 703
BsgI	GTGCAG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	102, 467
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	20, 99
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	105, 595
BsmAI	GTCTC	3 cut(s)	61, 200, 414
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	102, 467
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	37, 151, 381
Bsp19I	CCATGG	1 cut(s)	633
BspANI	GGCC	2 cut(s)	102, 467
BspCNI	CTCAG	2 cut(s)	525, 754
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	2 cut(s)	146, 159
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	23, 127
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	90, 110, 671
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	317, 633
BssMI	GATC	3 cut(s)	37, 151, 381
BssT1I	CCWWGG	2 cut(s)	317, 633
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	215, 339, 573
BstAPI	GCANNNNNTGC	3 cut(s)	371, 713, 737
BstAUI	TGTACA	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	6 cut(s)	346, 350, 563, 567, 609, 738
BstDEI	CTNAG	2 cut(s)	533, 762
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	8, 92
BstKTI	GATC	3 cut(s)	40, 154, 384
BstMAI	GTCTC	3 cut(s)	61, 200, 414
BstMBI	GATC	3 cut(s)	37, 151, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 713, 737
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	2 cut(s)	277, 352
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	2 cut(s)	283, 738
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	5 cut(s)	568, 616, 640, 700, 703
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	102, 467
BtgI	CCRYGG	1 cut(s)	633
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	6 cut(s)	346, 350, 563, 567, 609, 738
CaiI	CAGNNNCTG	2 cut(s)	713, 737
CfoI	GCGC	2 cut(s)	8, 92
Cfr10I	RCCGGY	1 cut(s)	98
Csp6I	GTAC	4 cut(s)	96, 271, 416, 542
CviAII	CATG	5 cut(s)	245, 274, 349, 362, 634
CviQI	GTAC	4 cut(s)	96, 271, 416, 542
DdeI	CTNAG	2 cut(s)	533, 762
DpnI	GATC	3 cut(s)	39, 153, 383
DpnII	GATC	3 cut(s)	37, 151, 381
EaeI	YGGCCR	2 cut(s)	100, 465
Eco130I	CCWWGG	2 cut(s)	317, 633
Eco31I	GGTCTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	317, 633
EcoT22I	ATGCAT	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	317, 633
FaeI	CATG	5 cut(s)	248, 277, 352, 365, 637
FaiI	YATR	8 cut(s)	117, 246, 275, 350, 363, 372, 459, 635
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	5 cut(s)	244, 273, 348, 361, 633
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	582, 605, 654, 714, 717
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	5 cut(s)	582, 605, 654, 714, 717
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	2 cut(s)	7, 91
GluI	GCNGC	5 cut(s)	582, 605, 654, 714, 717
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	102, 467
HapII	CCGG	2 cut(s)	20, 99
HhaI	GCGC	2 cut(s)	8, 92
Hin1II	CATG	5 cut(s)	248, 277, 352, 365, 637
Hin6I	GCGC	2 cut(s)	6, 90
HinP1I	GCGC	2 cut(s)	6, 90
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	1 cut(s)	644
HpaII	CCGG	2 cut(s)	20, 99
Hpy166II	GTNNAC	2 cut(s)	542, 569
Hpy188I	TCNGA	4 cut(s)	42, 203, 679, 763
Hpy188III	TCNNGA	4 cut(s)	60, 379, 508, 746
Hpy8I	GTNNAC	2 cut(s)	542, 569
HpyCH4III	ACNGT	3 cut(s)	215, 339, 573
HpyCH4IV	ACGT	2 cut(s)	64, 94
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 713, 737
HpyF3I	CTNAG	2 cut(s)	533, 762
HpySE526I	ACGT	2 cut(s)	64, 94
Hsp92II	CATG	5 cut(s)	248, 277, 352, 365, 637
HspAI	GCGC	2 cut(s)	6, 90
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	37, 151, 381
LmnI	GCTCC	3 cut(s)	73, 124, 724
Lsp1109I	GCAGC	5 cut(s)	568, 616, 640, 700, 703
LweI	GCATC	2 cut(s)	166, 739
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	2 cut(s)	64, 94
MaeIII	GTNAC	2 cut(s)	240, 516
MalI	GATC	3 cut(s)	39, 153, 383
MboI	GATC	3 cut(s)	37, 151, 381
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	2 cut(s)	257, 399
MmeI	TCCRAC	2 cut(s)	118, 375
MnlI	CCTC	6 cut(s)	143, 299, 504, 592, 703, 757
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	2 cut(s)	12, 266
MslI	CAYNNNNRTG	2 cut(s)	638, 695
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	2 cut(s)	20, 99
MspR9I	CCNGG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	371, 713, 737
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	37, 151, 381
NlaIII	CATG	5 cut(s)	248, 277, 352, 365, 637
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	2 cut(s)	277, 352
OliI	CACNNNNGTG	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	763
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	5 cut(s)	583, 606, 655, 715, 718
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	2 cut(s)	713, 737
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	4 cut(s)	97, 272, 417, 543
RsaNI	GTAC	4 cut(s)	96, 271, 416, 542
RseI	CAYNNNNRTG	2 cut(s)	638, 695
SaqAI	TTAA	2 cut(s)	12, 266
SatI	GCNGC	5 cut(s)	582, 605, 654, 714, 717
Sau3AI	GATC	3 cut(s)	37, 151, 381
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	166, 739
SfcI	CTRYAG	2 cut(s)	283, 738
SmiMI	CAYNNNNRTG	2 cut(s)	638, 695
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	2 cut(s)	257, 399
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	2 cut(s)	317, 633
TaaI	ACNGT	3 cut(s)	215, 339, 573
TaiI	ACGT	2 cut(s)	67, 97
TasI	AATT	2 cut(s)	257, 399
TatI	WGTACW	2 cut(s)	270, 415
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	2 cut(s)	12, 266
Tru9I	TTAA	2 cut(s)	12, 266
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	5 cut(s)	581, 604, 653, 713, 716
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	430, 438, 469, 570
TspRI	CASTG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	277, 352
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.