Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Reverse (-)

5788155 .. 5789780

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG079900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGACTATGGCTGATGATGAAATGTGCGCTGTTAATGTTCCGGCATTGCAGACTGATGGTCTGATTTTTCTTTGGGTCACTGGACGTGTGATGGAGCTTGGACGTGAATGGCGGATGTCACTCGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAACGCTTGCGTGCACGGTTCAAGGCTGCTTACCCAGAGATGGACGTGCAGCCAGCTTCCCCACCCAGAGCTTCTGCCATGGAAGTGAATTCAAATGCTACCCAAACAAGAAGTCCAGTTTCCGAAGCAAAGCCCACAGCTGTGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCAGTTCCAGATGCACCTGCTTCTGAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

137

Amino Acids

14.85

Weight (kDa)

4.53

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	1 - 61	1.7e-12	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AciI	CCGC	2 cut(s)	11, 154
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	220, 291
AhdI	GACNNNNNGTC	1 cut(s)	99
AjiI	CACGTC	3 cut(s)	128, 146, 244
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	139, 254, 269, 338
AluI	AGCT	4 cut(s)	139, 254, 269, 338
Alw21I	GWGCWC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	2 cut(s)	356, 380
ApaLI	GTGCAC	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	224, 247, 356, 359
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspLEI	GCGC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	4 cut(s)	211, 259, 343, 346
BccI	CCATC	3 cut(s)	92, 127, 232
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	4 cut(s)	225, 248, 357, 360
BlsI	GCNGC	4 cut(s)	226, 249, 358, 361
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgBI	CACGTC	3 cut(s)	128, 146, 244
BmsI	GCATC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	14, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	127, 314
Bse3DI	GCAATG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	14, 276
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	167, 396
BseNI	ACTGG	2 cut(s)	127, 314
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	4 cut(s)	211, 259, 343, 346
BsgI	GTGCAG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	32, 58
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	32, 58
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	2 cut(s)	14, 276
BspACI	CCGC	2 cut(s)	11, 154
BspCNI	CTCAG	2 cut(s)	168, 397
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	127, 314
BssECI	CCNNGG	2 cut(s)	14, 276
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	14, 276
Bst4CI	ACNGT	1 cut(s)	216
BstAPI	GCANNNNNTGC	2 cut(s)	356, 380
BstC8I	GCNNGC	4 cut(s)	206, 210, 252, 381
BstDEI	CTNAG	2 cut(s)	176, 405
BstDSI	CCRYGG	2 cut(s)	14, 276
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 380
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	211, 259, 343, 346
BtgI	CCRYGG	2 cut(s)	14, 276
BtrI	CACGTC	3 cut(s)	128, 146, 244
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	4 cut(s)	206, 210, 252, 381
CaiI	CAGNNNCTG	2 cut(s)	356, 380
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	2 cut(s)	15, 277
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	176, 405
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	14, 276
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	14, 276
ErhI	CCWWGG	2 cut(s)	14, 276
FaeI	CATG	2 cut(s)	18, 280
FaiI	YATR	6 cut(s)	16, 27, 29, 42, 50, 278
FaqI	GGGAC	2 cut(s)	32, 58
FatI	CATG	2 cut(s)	14, 276
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	225, 248, 357, 360
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	225, 248, 357, 360
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	225, 248, 357, 360
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	18, 280
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	185, 212
Hpy188I	TCNGA	3 cut(s)	105, 322, 406
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	2 cut(s)	185, 212
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	3 cut(s)	127, 145, 243
HpyCH4V	TGCA	6 cut(s)	91, 212, 247, 343, 383, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 380
HpyF3I	CTNAG	2 cut(s)	176, 405
HpySE526I	ACGT	3 cut(s)	127, 145, 243
Hsp92II	CATG	2 cut(s)	18, 280
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	136, 367
LpnPI	CCDG	8 cut(s)	96, 108, 246, 264, 277, 327, 393, 402
Lsp1109I	GCAGC	4 cut(s)	211, 259, 343, 346
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	3 cut(s)	127, 145, 243
MaeIII	GTNAC	2 cut(s)	118, 159
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	32, 286
MnlI	CCTC	2 cut(s)	346, 400
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	3 cut(s)	26, 281, 338
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	356, 380
NcoI	CCATGG	2 cut(s)	14, 276
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	18, 280
NmuCI	GTSAC	2 cut(s)	118, 159
OliI	CACNNNNGTG	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	226, 249, 358, 361
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	2 cut(s)	356, 380
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	3 cut(s)	26, 281, 338
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	4 cut(s)	225, 248, 357, 360
Sau3AI	GATC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	130, 141, 148, 246, 256, 271, 340, 400
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	3 cut(s)	26, 281, 338
Sse9I	AATT	2 cut(s)	32, 286
SsiI	CCGC	2 cut(s)	11, 154
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	2 cut(s)	14, 276
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	3 cut(s)	130, 148, 246
TasI	AATT	2 cut(s)	32, 286
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	118, 159
TseI	GCWGC	4 cut(s)	224, 247, 356, 359
Tsp45I	GTSAC	2 cut(s)	118, 159
TspDTI	ATGAA	3 cut(s)	14, 75, 213
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.