Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Reverse (-)

6437398 .. 6439528

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCACTCGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAACGCTTGCGTGCACGGTTCAAGGCTGCTTACCCAGAGATGGAGGTGCAGCCAGCTTCCCCACCCAGAGCTTCTGCCATGGAAGTGGATTCAAATGCTGCCCAAACAAGAAGTCCAGTTTCCGAAGCAAAGCCCACAGCTGTGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCAGTTCCAGATGCACCTGCTTCTGAGGGGACCAATCGGGTCTGCAATGTTTTCGAATCTAGTTGCTTGGAAGAGATTGGATTGGTTTGCAATCTGGGGCTAGCTGCAGAAGATTTGGTGGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

117

Amino Acids

12.29

Weight (kDa)

4.59

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	64, 135
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	4 cut(s)	98, 113, 182, 329
AluI	AGCT	4 cut(s)	98, 113, 182, 329
Alw21I	GWGCWC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	54
AlwNI	CAGNNNCTG	2 cut(s)	200, 224
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	6 cut(s)	68, 91, 140, 200, 203, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspS9I	GGNCC	1 cut(s)	255
AsuII	TTCGAA	1 cut(s)	279
AsuNHI	GCTAGC	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	6 cut(s)	55, 103, 127, 187, 190, 316
BccI	CCATC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BfaI	CTAG	4 cut(s)	191, 285, 326, 348
BfmI	CTRYAG	2 cut(s)	225, 330
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 330
BlsI	GCNGC	6 cut(s)	70, 93, 142, 202, 205, 331
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	226
BmtI	GCTAGC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	11, 240
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	55, 103, 127, 187, 190, 316
BsgI	GTGCAG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	12, 241
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	2 cut(s)	229, 334
BspMI	ACCTGC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	2 cut(s)	200, 224
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	5 cut(s)	50, 54, 96, 225, 327
BstDEI	CTNAG	2 cut(s)	20, 249
BstDSI	CCRYGG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 224
BstSFI	CTRYAG	2 cut(s)	225, 330
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	6 cut(s)	55, 103, 127, 187, 190, 316
BstXI	CCANNNNNNTGG	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	5 cut(s)	50, 54, 96, 225, 327
CaiI	CAGNNNCTG	2 cut(s)	200, 224
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	20, 249
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 330
Fsp4HI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 330
FspBI	CTAG	4 cut(s)	191, 285, 326, 348
GluI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 330
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	2 cut(s)	131, 281
Hpy166II	GTNNAC	2 cut(s)	29, 56
Hpy188I	TCNGA	2 cut(s)	166, 250
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	29, 56
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	8 cut(s)	56, 91, 187, 227, 239, 270, 315, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 224
HpyF3I	CTNAG	2 cut(s)	20, 249
Hsp92II	CATG	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	90, 108, 121, 171, 237, 246, 255, 305
Lsp1109I	GCAGC	6 cut(s)	55, 103, 127, 187, 190, 316
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	4 cut(s)	191, 285, 326, 348
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	308, 347
MhlI	GDGCHC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	79, 190, 244
MslI	CAYNNNNRTG	2 cut(s)	125, 182
MspA1I	CMGCKG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	200, 224
NcoI	CCATGG	1 cut(s)	120
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	131, 281
PkrI	GCNGC	6 cut(s)	70, 93, 142, 202, 205, 331
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	2 cut(s)	229, 334
PstNI	CAGNNNCTG	2 cut(s)	200, 224
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	125, 182
SatI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 330
Sau96I	GGNCC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	7 cut(s)	90, 100, 115, 184, 244, 331, 353
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	225, 330
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	125, 182
SspMI	CTAG	4 cut(s)	191, 285, 326, 348
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	131, 281
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	6 cut(s)	68, 91, 140, 200, 203, 329
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	255
XspI	CTAG	4 cut(s)	191, 285, 326, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.