Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Forward (+)

4742359 .. 4744074

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG068200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCACTAGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAACGCTTGCGTGCACGGTTCAAGGCTGCTTACCCAGAGATGGAGGTGCAGCCAGCTTCCCCACCCAGAGCTTCTGCCATGGAAGTGGATTCAAATGCTGCCCAAACAAGAAGTCCAGTTTCGGAAGCAAAGCCCACAGCTGTGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCAGTTCCAGATGCACCTGCTTCTGAGGGGACCGATCGGGTCTGCAATGTTTTCAAATCTAGTTGCTTGGAAGAGATTGGATTGGTTTGCAATCTGGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

109

Amino Acids

11.41

Weight (kDa)

4.76

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	64, 135, 280
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	98, 113, 182
AluI	AGCT	3 cut(s)	98, 113, 182
Alw21I	GWGCWC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	54
AlwNI	CAGNNNCTG	2 cut(s)	200, 224
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	5 cut(s)	68, 91, 140, 200, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspS9I	GGNCC	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	5 cut(s)	55, 103, 127, 187, 190
BccI	CCATC	1 cut(s)	76
BfaI	CTAG	4 cut(s)	8, 191, 285, 328
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 325
BlsI	GCNGC	6 cut(s)	70, 93, 142, 202, 205, 326
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	11, 240
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	5 cut(s)	55, 103, 127, 187, 190
BsgI	GTGCAG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	259
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	12, 241
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	2 cut(s)	200, 224
BstC8I	GCNNGC	4 cut(s)	50, 54, 96, 225
BstDEI	CTNAG	2 cut(s)	20, 249
BstDSI	CCRYGG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 224, 321
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	5 cut(s)	55, 103, 127, 187, 190
BstXI	CCANNNNNNTGG	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	50, 54, 96, 225
CaiI	CAGNNNCTG	2 cut(s)	200, 224
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	9 cut(s)	68, 94, 98, 113, 175, 182, 200, 223, 327
CviKI_1	RGCY	9 cut(s)	68, 94, 98, 113, 175, 182, 200, 223, 327
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	20, 249
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 325
Fsp4HI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 325
FspBI	CTAG	4 cut(s)	8, 191, 285, 328
GluI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 325
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	29, 56
Hpy188I	TCNGA	2 cut(s)	166, 250
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	29, 56
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	7 cut(s)	56, 91, 187, 227, 239, 270, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 224, 321
HpyF3I	CTNAG	2 cut(s)	20, 249
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	90, 108, 121, 171, 237, 246, 255, 305
Lsp1109I	GCAGC	5 cut(s)	55, 103, 127, 187, 190
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	4 cut(s)	8, 191, 285, 328
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	79, 190, 244
MslI	CAYNNNNRTG	2 cut(s)	125, 182
MspA1I	CMGCKG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	200, 224, 321
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	3
OliI	CACNNNNGTG	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	6 cut(s)	70, 93, 142, 202, 205, 326
Ple19I	CGATCG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	2 cut(s)	200, 224
PvuI	CGATCG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	125, 182
SatI	GCNGC	6 cut(s)	69, 92, 141, 201, 204, 325
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	6 cut(s)	13, 90, 100, 115, 184, 244
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	2 cut(s)	125, 182
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	4 cut(s)	8, 191, 285, 328
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	272
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	68, 91, 140, 200, 203
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	255
XspI	CTAG	4 cut(s)	8, 191, 285, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.