Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Reverse (-)

205050 .. 205343

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgtcactcggtaatcaactgagtggtgtacgattggttgatgaaggcttgcgggcacggttcaaggctgcctacccagaggtggaggtgcagccagcttccccacccagagcttctgccatggaagtggattcaaatgctgcccaaacgagaagtccattttccgaagcaaagcccacagctgcacaactagcagaggttgctgctccacaacaagcagagcctgcagggccagatgcgcctgcttctgagggtaagccaacgtctaccaccgatgttgacatggccggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

97

Amino Acids

9.95

Weight (kDa)

4.53

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	64, 135
AluBI	AGCT	3 cut(s)	98, 113, 182
AluI	AGCT	3 cut(s)	98, 113, 182
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	230, 285
ApeKI	GCWGC	5 cut(s)	68, 91, 140, 182, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	58
BbvI	GCAGC	5 cut(s)	55, 103, 127, 169, 190
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	5 cut(s)	69, 92, 141, 183, 204
BlsI	GCNGC	5 cut(s)	70, 93, 142, 184, 205
BmgT120I	GGNCC	1 cut(s)	230
BmsI	GCATC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	11, 240
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	5 cut(s)	55, 103, 127, 169, 190
BsgI	GTGCAG	2 cut(s)	110, 168
BshFI	GGCC	2 cut(s)	232, 287
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	2 cut(s)	232, 287
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	232, 287
BspCNI	CTCAG	2 cut(s)	12, 241
BspMAI	CTGCAG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	200, 224
BstC8I	GCNNGC	6 cut(s)	50, 54, 96, 225, 243, 289
BstDEI	CTNAG	2 cut(s)	20, 249
BstDSI	CCRYGG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 200, 224, 229, 238
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	5 cut(s)	55, 103, 127, 169, 190
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	232, 287
BtgI	CCRYGG	1 cut(s)	120
Cac8I	GCNNGC	6 cut(s)	50, 54, 96, 225, 243, 289
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	121, 283
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	20, 249
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	124, 286
FaiI	YATR	2 cut(s)	122, 284
FatI	CATG	2 cut(s)	120, 282
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	5 cut(s)	69, 92, 141, 183, 204
Fsp4HI	GCNGC	5 cut(s)	69, 92, 141, 183, 204
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	5 cut(s)	69, 92, 141, 183, 204
HaeIII	GGCC	2 cut(s)	232, 287
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	124, 286
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	29, 267, 280
Hpy188I	TCNGA	2 cut(s)	166, 250
Hpy8I	GTNNAC	3 cut(s)	29, 267, 280
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	91, 185, 227
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 200, 224, 229, 238
HpyF3I	CTNAG	2 cut(s)	20, 249
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	124, 286
HspAI	GCGC	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	7 cut(s)	90, 108, 121, 213, 237, 246, 255
Lsp1109I	GCAGC	5 cut(s)	55, 103, 127, 169, 190
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	3
MhlI	GDGCHC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	73, 79, 190, 244
MroNI	GCCGGC	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	191, 200, 224, 229, 238
NaeI	GCCGGC	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	120
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	124, 286
NmuCI	GTSAC	1 cut(s)	3
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	70, 93, 142, 184, 205
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	5 cut(s)	69, 92, 141, 183, 204
Sau96I	GGNCC	1 cut(s)	230
SbfI	CCTGCAGG	1 cut(s)	229
SdaI	CCTGCAGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	7 cut(s)	84, 90, 100, 115, 184, 201, 266
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse8387I	CCTGCAGG	1 cut(s)	229
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	68, 91, 140, 182, 203
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.