Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036731.1

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Reverse (-)

417 .. 1105

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036731.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgtaccctttgctggagaggattagtccaagaacaagaaagctggaactgtttgcacgcatgcacaacactcatgcagggtggatgtcactcggtaatcaactgagtggtgtacgattggttgatgaaggcctgcgggcacggttcaaggctgcctacccagaggtggaggtgcagccagcttccccacccagagcttctgccatggaagtggattcaaatgctgcccaaacgagaagtccattttctgaagcaaagcccacagctgcacaactagcagaggttgctgctccacaacaagcagagcctgcagggccagatgcgcctgcttctgaaggtaagccaacgtctaccaccgatgttgacatggccggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

125

Amino Acids

13.36

Weight (kDa)

5.67

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	350
AciI	CCGC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	369
AcuI	CTGAAG	2 cut(s)	270, 354
AfaI	GTAC	2 cut(s)	5, 114
AfiI	CCNNNNNNNGG	2 cut(s)	13, 166
AgsI	TTSAA	2 cut(s)	148, 219
AluBI	AGCT	4 cut(s)	43, 182, 197, 266
AluI	AGCT	4 cut(s)	43, 182, 197, 266
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	3 cut(s)	130, 314, 369
ApeKI	GCWGC	5 cut(s)	152, 175, 224, 266, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	142
BbvI	GCAGC	5 cut(s)	139, 187, 211, 253, 274
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	5 cut(s)	153, 176, 225, 267, 288
BlsI	GCNGC	5 cut(s)	154, 177, 226, 268, 289
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 166
Bse118I	RCCGGY	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	13, 166
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	139, 187, 211, 253, 274
BsgI	GTGCAG	2 cut(s)	194, 252
BshFI	GGCC	3 cut(s)	132, 316, 371
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	13, 166
BsnI	GGCC	3 cut(s)	132, 316, 371
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	3 cut(s)	132, 316, 371
BspCNI	CTCAG	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	51, 144
BstAPI	GCANNNNNTGC	2 cut(s)	284, 308
BstC8I	GCNNGC	8 cut(s)	58, 62, 134, 138, 180, 309, 327, 373
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 284, 308, 313, 322
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	139, 187, 211, 253, 274
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	132, 316, 371
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	8 cut(s)	58, 62, 134, 138, 180, 309, 327, 373
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	4, 113
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	4 cut(s)	61, 74, 205, 367
CviQI	GTAC	2 cut(s)	4, 113
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	270, 354
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	64, 77, 208, 370
FaiI	YATR	4 cut(s)	62, 75, 206, 368
FatI	CATG	4 cut(s)	60, 73, 204, 366
FauI	CCCGC	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	5 cut(s)	153, 176, 225, 267, 288
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	153, 176, 225, 267, 288
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	5 cut(s)	153, 176, 225, 267, 288
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	132, 316, 371
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	4 cut(s)	64, 77, 208, 370
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	372
Hpy166II	GTNNAC	3 cut(s)	113, 351, 364
Hpy188I	TCNGA	2 cut(s)	250, 334
Hpy8I	GTNNAC	3 cut(s)	113, 351, 364
HpyAV	CCTTC	2 cut(s)	122, 329
HpyCH4III	ACNGT	2 cut(s)	51, 144
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	6 cut(s)	56, 64, 77, 175, 269, 311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 284, 308, 313, 322
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	64, 77, 208, 370
HspAI	GCGC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	5 cut(s)	139, 187, 211, 253, 274
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	12, 157, 163, 274
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	5 cut(s)	275, 284, 308, 313, 322
NaeI	GCCGGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	204
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	4 cut(s)	64, 77, 208, 370
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	154, 177, 226, 268, 289
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	5, 114
RsaNI	GTAC	2 cut(s)	4, 113
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	5 cut(s)	153, 176, 225, 267, 288
Sau96I	GGNCC	1 cut(s)	314
SbfI	CCTGCAGG	1 cut(s)	313
SdaI	CCTGCAGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	9 cut(s)	45, 168, 174, 184, 199, 268, 285, 340, 350
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	64
Sse8387I	CCTGCAGG	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	51, 144
TaiI	ACGT	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	5 cut(s)	152, 175, 224, 266, 287
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	141
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.