Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019443

Physical Location & Seq

Genomic Coordinates Forward (+)

6058461 .. 6060109

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG084000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGCCTATGGCTGATGATGAAATGTGCACTCTTAATGTTCCGGCATTGCAGACTGATGGTCTGATTTTTCTTTGGGTCACTGGACGTGTGATGGAGCTTGGACGTGAATGGTGGATGTCACTCGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAAGGCTTGCATGCACGGTTTAAGGCTGCCTACCCAGAGGTGGAGGTGCAGCGAGCCAGCTTCTCCACCCAGAGCTTCTGCCATGGAAGTGGATTCAAATGCTGCCCAAACAAGAAGTCCAGTTTCCGAAGCAAAGCCCACAGCTGCGCGCAACTAGCAGAGGCTGTTGCTCCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

125

Amino Acids

13.92

Weight (kDa)

5.74

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	1 - 56	1.5e-12	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186261
rosa_multiflora	Rmu_co8037660.1_g000001 Rmu_sc0036731.1_g000001 Rmu_ssc0000024.1_g000048
rosa_samantha	Rh7AG068200 Rh7BG084000 Rh7CG079900 Rh7DG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	2
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	295
AhdI	GACNNNNNGTC	1 cut(s)	99
AjiI	CACGTC	2 cut(s)	128, 146
AluBI	AGCT	4 cut(s)	139, 258, 273, 342
AluI	AGCT	4 cut(s)	139, 258, 273, 342
Alw21I	GWGCWC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	44
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	4 cut(s)	224, 247, 300, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	2 cut(s)	347, 349
AspS9I	GGNCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	211, 259, 287, 329
BccI	CCATC	2 cut(s)	92, 127
BfaI	CTAG	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	225, 248, 301, 343
BlsI	GCNGC	4 cut(s)	226, 249, 302, 344
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgBI	CACGTC	2 cut(s)	128, 146
BmgT120I	GGNCC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	14, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	127, 318
Bse3DI	GCAATG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	14, 280
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	127, 318
BsePI	GCGCGC	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	211, 259, 287, 329
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	2 cut(s)	14, 280
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	127, 318
BssECI	CCNNGG	2 cut(s)	14, 280
BssHII	GCGCGC	1 cut(s)	345
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	14, 280
Bst4CI	ACNGT	1 cut(s)	216
BstC8I	GCNNGC	5 cut(s)	206, 210, 252, 256, 347
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	2 cut(s)	14, 280
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	2 cut(s)	347, 349
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 353
BstNSI	RCATGY	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	4 cut(s)	211, 259, 287, 329
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	2 cut(s)	14, 280
BtrI	CACGTC	2 cut(s)	128, 146
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	5 cut(s)	206, 210, 252, 256, 347
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	347, 349
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	3 cut(s)	15, 209, 281
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	14, 280
EcoT14I	CCWWGG	2 cut(s)	14, 280
ErhI	CCWWGG	2 cut(s)	14, 280
FaeI	CATG	3 cut(s)	18, 212, 284
FaiI	YATR	7 cut(s)	16, 27, 29, 42, 50, 210, 282
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	3 cut(s)	14, 208, 280
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	225, 248, 301, 343
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	225, 248, 301, 343
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	2 cut(s)	346, 348
GluI	GCNGC	4 cut(s)	225, 248, 301, 343
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	347, 349
Hin1II	CATG	3 cut(s)	18, 212, 284
Hin6I	GCGC	2 cut(s)	345, 347
HinP1I	GCGC	2 cut(s)	345, 347
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	69, 185
Hpy188I	TCNGA	2 cut(s)	105, 326
Hpy8I	GTNNAC	2 cut(s)	69, 185
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	2 cut(s)	127, 145
HpyCH4V	TGCA	5 cut(s)	69, 91, 208, 212, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 353
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	2 cut(s)	127, 145
Hsp92II	CATG	3 cut(s)	18, 212, 284
HspAI	GCGC	2 cut(s)	345, 347
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	136, 373
LpnPI	CCDG	6 cut(s)	96, 108, 246, 268, 281, 331
Lsp1109I	GCAGC	4 cut(s)	211, 259, 287, 329
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	2 cut(s)	127, 145
MaeIII	GTNAC	2 cut(s)	118, 159
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	3 cut(s)	229, 235, 352
MseI	TTAA	2 cut(s)	75, 219
MslI	CAYNNNNRTG	2 cut(s)	26, 285
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	43, 353
NcoI	CCATGG	2 cut(s)	14, 280
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	18, 212, 284
NmuCI	GTSAC	2 cut(s)	118, 159
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PauI	GCGCGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	226, 249, 302, 344
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	362
PteI	GCGCGC	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	342
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	26, 285
SaqAI	TTAA	2 cut(s)	75, 219
SatI	GCNGC	4 cut(s)	225, 248, 301, 343
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	8 cut(s)	130, 141, 148, 240, 246, 260, 275, 344
SmiMI	CAYNNNNRTG	2 cut(s)	26, 285
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	14, 280
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	2 cut(s)	130, 148
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	75, 219
Tru9I	TTAA	2 cut(s)	75, 219
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	118, 159
TseI	GCWGC	4 cut(s)	224, 247, 300, 342
Tsp45I	GTSAC	2 cut(s)	118, 159
TspDTI	ATGAA	3 cut(s)	14, 75, 213
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.