RchiOBHm_Chr7g0186281

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019974
Physical Location & Seq
Reverse (-)
6271920 .. 6272935
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGTACTGGCACAACATCAGGTTGGACTTGCCCTATGGACACTCTTTTACGGTGCGGCTGTCATCACCCCATATCGGTCCACGAGGAATATCTGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCCTAGCTGGTGCAATTGCTCCAGTTCTAGTTTGGTTAGCTGCTACGGCATTTCCACAAAAGAAGTGGATTCGACTCATCAACATGCCGGTTTTAATAATCGGGACTGGCCACTGGCTACTGCGGTTAACTACACTTAGCTTCTTGGATCATTTTGGGTTTTCTCTCTGGTTTTGTAGCGTACAAGTAATATTAGGTATAGACCAGATTGGTGGAGGAGACACAACTATGTTCTTTCTGTGGCACTTGATGCTGGTCTTACCTTTTTGGGGGTACTGTTGTATTTTACCGTTGGATTGGAAGACATTAGTCCCAGCTGGTGGGGAACTGACCTTGATGGGTGTCCCTTGGCTCAATGTCCTACAGCCACAGGGGTGGTGGTTGAAGGCTTTTTTTTTTTTTTGA

Protein Analysis

177

Amino Acids

20.15

Weight (kDa)

8.54

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0186281
rosa_laevigata RLG00000004853
rosa_multiflora Rmu_co8215358.1_g000001
rosa_roxburghii Rroxscaffold_3G00227280
rosa_samantha Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 2 cut(s) 55, 253
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 3 cut(s) 5, 312, 404
AfiI CCNNNNNNNGG 3 cut(s) 74, 398, 449
AgsI TTSAA 1 cut(s) 514
AleI CACNNNNGTG 1 cut(s) 502
AluBI AGCT 4 cut(s) 137, 170, 270, 446
AluI AGCT 4 cut(s) 137, 170, 270, 446
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 285
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 113, 170
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 107
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BalI TGGCCA 1 cut(s) 240
BauI CACGAG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 125, 157
BccI CCATC 1 cut(s) 460
BceAI ACGGC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 2 cut(s) 134, 158
BfmI CTRYAG 1 cut(s) 491
BisI GCNGC 3 cut(s) 56, 114, 171
BlsI GCNGC 3 cut(s) 57, 115, 172
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 369
BoxI GACNNNNGTC 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 398, 449
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 5 cut(s) 11, 128, 152, 241, 248
BseDI CCNNGG 1 cut(s) 476
BseLI CCNNNNNNNGG 3 cut(s) 74, 398, 449
BseNI ACTGG 5 cut(s) 11, 128, 152, 241, 248
BseRI GAGGAG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 2 cut(s) 125, 157
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 4 cut(s) 110, 247, 425, 458
BslI CCNNNNNNNGG 3 cut(s) 74, 398, 449
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 4 cut(s) 110, 247, 425, 458
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 55, 253
BspANI GGCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 5 cut(s) 11, 128, 152, 241, 248
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 81
Bst4CI ACNGT 3 cut(s) 52, 407, 420
BstAPI GCANNNNNTGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 176, 379
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 125, 157
BstV2I GAAGAC 1 cut(s) 437
BstXI CCANNNNNNTGG 2 cut(s) 341, 504
BsuRI GGCC 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 241
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 4, 311, 403
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 1 cut(s) 214
CviQI GTAC 3 cut(s) 4, 311, 403
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 1 cut(s) 217
FaiI YATR 7 cut(s) 36, 72, 109, 111, 215, 329, 359
FaqI GGGAC 4 cut(s) 110, 247, 425, 458
FatI CATG 1 cut(s) 213
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 56, 114, 171
Fsp4HI GCNGC 3 cut(s) 56, 114, 171
FspBI CTAG 2 cut(s) 134, 158
GluI GCNGC 3 cut(s) 56, 114, 171
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 218
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 2 cut(s) 199, 204
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 3 cut(s) 80, 121, 258
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 3 cut(s) 80, 121, 258
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 3 cut(s) 52, 407, 420
HpyCH4V TGCA 2 cut(s) 113, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 379
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 2 cut(s) 125, 157
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 134, 158
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 2 cut(s) 121, 442
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 2 cut(s) 77, 338
Mox20I TGGCCA 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 224, 257
MslI CAYNNNNRTG 3 cut(s) 212, 356, 502
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 176, 379
NdeI CATATG 1 cut(s) 109
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 217
NspI RCATGY 1 cut(s) 217
OliI CACNNNNGTG 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 3 cut(s) 57, 115, 172
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 3 cut(s) 5, 312, 404
RsaNI GTAC 3 cut(s) 4, 311, 403
RseI CAYNNNNRTG 3 cut(s) 212, 356, 502
SaqAI TTAA 2 cut(s) 224, 257
SatI GCNGC 3 cut(s) 56, 114, 171
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 107
SetI ASST 8 cut(s) 23, 139, 172, 272, 328, 394, 448, 464
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 212, 356, 502
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 55, 253
SspI AATATT 1 cut(s) 321
SspMI CTAG 2 cut(s) 134, 158
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 52, 407, 420
TaqI TCGA 1 cut(s) 202
TaqII GACCGA 1 cut(s) 65
TasI AATT 1 cut(s) 144
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 224, 257
Tru9I TTAA 2 cut(s) 224, 257
TscAI CASTG 2 cut(s) 123, 248
TseI GCWGC 2 cut(s) 113, 170
TspRI CASTG 2 cut(s) 123, 248
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 77
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 3 cut(s) 159, 192, 504
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 134, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.