Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8215358.1

Orthogroup ID

OG0019974

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8215358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 361 bp

atctggggacttgggcacatatgcagcagtgaactggttcttcctagctggtgcaattgctccagttctagtttggttagccgctacggcatttccacaacagaagtggattcgactcatcaacataccggttttaataatcgcgactggccactggctactgcggtatagaccagattggtggaggagacacaactatgttctttctgtggcacttgatgctggtcttgcctttttgggggtactgttgtattttatagttggatcggaagacattagtcccagctggtggggaactgaccttgatgggtgtcccttggctcaatgtcccacaggctacagccacaggggtggtggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

6.78

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186281
rosa_laevigata	RLG00000004853
rosa_multiflora	Rmu_co8215358.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227280
rosa_samantha	Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	82, 164
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	149
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	238, 289
AgeI	ACCGGT	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	349
AluBI	AGCT	2 cut(s)	48, 286
AluI	AGCT	2 cut(s)	48, 286
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	24
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BalI	TGGCCA	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	45, 69
BfmI	CTRYAG	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	25, 82
BlsI	GCNGC	2 cut(s)	26, 83
BmsI	GCATC	1 cut(s)	209
BoxI	GACNNNNGTC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 289
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	4 cut(s)	39, 63, 152, 159
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	238, 289
BseNI	ACTGG	4 cut(s)	39, 63, 152, 159
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	4 cut(s)	21, 265, 298, 313
BslI	CCNNNNNNNGG	2 cut(s)	238, 289
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	4 cut(s)	21, 265, 298, 313
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	264
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	2 cut(s)	82, 164
BspANI	GGCC	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	39, 63, 152, 159
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 219, 228
BstPAI	GACNNNNGTC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	277
BstXI	CCANNNNNNTGG	2 cut(s)	181, 351
BsuRI	GGCC	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 152
BtuMI	TCGCGA	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviJI	RGCY	8 cut(s)	48, 81, 151, 158, 286, 321, 337, 343
CviKI_1	RGCY	8 cut(s)	48, 81, 151, 158, 286, 321, 337, 343
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaiI	YATR	6 cut(s)	20, 22, 126, 169, 199, 258
FaqI	GGGAC	4 cut(s)	21, 265, 298, 313
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	25, 82
Fsp4HI	GCNGC	2 cut(s)	25, 82
FspBI	CTAG	2 cut(s)	45, 69
GluI	GCNGC	2 cut(s)	25, 82
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	129
HinfI	GANTC	2 cut(s)	110, 115
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	24, 54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 219, 228
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	45, 69
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	32, 282
MfeI	CAATTG	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	1 cut(s)	178
Mox20I	TGGCCA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	196, 349
Msp20I	TGGCCA	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	87, 219, 228
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	1 cut(s)	264
NruI	TCGCGA	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	26, 83
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshAI	GACNNNNGTC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	196, 349
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	25, 82
Sau3AI	GATC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	3 cut(s)	50, 288, 304
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	196, 349
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	82, 164
SspMI	CTAG	2 cut(s)	45, 69
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	34, 159
TseI	GCWGC	1 cut(s)	24
TspRI	CASTG	2 cut(s)	34, 159
Van91I	CCANNNNNTGG	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	3 cut(s)	70, 103, 351
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	45, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.