Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019974

Physical Location & Seq

Genomic Coordinates Forward (+)

6055718 .. 6056044

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTACTGGCACAACATCAGTTTGGACTTGCCCTATGGACACTCTTTTACGGTGCGGCTGTCATCACCCCGGCCATATCGGTCCACGAGGAATATCTGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCCTAGCTGGTGCAATTGCTCCAGTTCTAGTTTGGTTAGCTACTTAGCTGCTACGGCATTTCCACAACAGAAGTGGATTCGACTCATCAACATGCCGGTTTTAATAATCGCGACGGGCCACTGGCTACTTCGGTTAACTACACTTAGCTTCTTGGATCATTTTGGGTTTTCTCTCTGGTTTTGTAGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

9.16

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186281
rosa_laevigata	RLG00000004853
rosa_multiflora	Rmu_co8215358.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227280
rosa_samantha	Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	71
AfaI	GTAC	1 cut(s)	5
AluBI	AGCT	4 cut(s)	141, 174, 182, 282
AluI	AGCT	4 cut(s)	141, 174, 182, 282
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	71, 250
ApeKI	GCWGC	2 cut(s)	117, 182
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	81, 250
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	129, 169
BceAI	ACGGC	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	138, 162
BisI	GCNGC	3 cut(s)	56, 118, 183
BlsI	GCNGC	3 cut(s)	57, 119, 184
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	81, 250
BmrFI	CCNGG	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	4 cut(s)	11, 132, 156, 260
BseDI	CCNNGG	1 cut(s)	68
BseNI	ACTGG	4 cut(s)	11, 132, 156, 260
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	129, 169
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	73, 252
BsiSI	CCGG	2 cut(s)	70, 230
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	73, 252
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	289
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	73, 252
BspFNI	CGCG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	11, 132, 156, 260
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	178, 278
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	129, 169
BsuRI	GGCC	2 cut(s)	73, 252
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 253
BtuMI	TCGCGA	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	81, 250
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	188, 223
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	58, 73, 141, 174, 182, 252, 259, 282
CviKI_1	RGCY	8 cut(s)	58, 73, 141, 174, 182, 252, 259, 282
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	178, 278
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	81
FaeI	CATG	1 cut(s)	229
FaiI	YATR	6 cut(s)	36, 76, 113, 115, 227, 325
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	56, 118, 183
Fsp4HI	GCNGC	3 cut(s)	56, 118, 183
FspBI	CTAG	2 cut(s)	138, 162
GluI	GCNGC	3 cut(s)	56, 118, 183
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	73, 252
HapII	CCGG	2 cut(s)	70, 230
Hin1II	CATG	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	211, 216
HpaI	GTTAAC	1 cut(s)	270
HpaII	CCGG	2 cut(s)	70, 230
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	3 cut(s)	84, 125, 270
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	84, 125, 270
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	117, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	178, 278
Hsp92II	CATG	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	82, 83, 113, 127, 169, 241, 243, 295
Lsp1109I	GCAGC	2 cut(s)	129, 169
MaeI	CTAG	2 cut(s)	138, 162
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	125
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	236, 269
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	70, 230
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	113
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	229
NruI	TCGCGA	1 cut(s)	245
NspI	RCATGY	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	57, 119, 184
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	81, 250
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	236, 269
SatI	GCNGC	3 cut(s)	56, 118, 183
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	2 cut(s)	81, 250
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	143, 176, 184, 284
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	138, 162
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	214
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	236, 269
Tru9I	TTAA	2 cut(s)	236, 269
TscAI	CASTG	2 cut(s)	127, 260
TseI	GCWGC	2 cut(s)	117, 182
TspRI	CASTG	2 cut(s)	127, 260
VpaK11BI	GGWCC	1 cut(s)	81
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	2 cut(s)	163, 204
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	138, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.