Rh7DG080500

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019974
Physical Location & Seq
Reverse (-)
6442823 .. 6443290
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG080500.1

Sequence Viewer

Length: 378 bp
ATGAAAATCCCTCCTAGAACTATGTTCATGGCACAGGTTGTTGGAACCGTTATCGCCAGGCTTGTCTACTTGTCCACGGCATGGTGGCTAATGGAGACCATTCCCCCATATGTACTGGCACAACATCAGGTTGGACTTGCCCTATGGACACTCTTTTACGGTGCGGCTGTCATCACCCCATATCGGTCCACGAGGAATATCTGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCCTAGCTGGTGCAATTGCTCCAGTTCTAGTTTGGTTAGCTGCTACGGCATTTCCACAAAAGAAGTGGATTCGACTCATCAACATGCCGGTTTTAATAATCGGGACTGGCCACTGGCTACTGCGGTTAACTACACTTAG

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

8.43

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 58 8.9e-06 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0186281
rosa_laevigata RLG00000004853
rosa_multiflora Rmu_co8215358.1_g000001
rosa_roxburghii Rroxscaffold_3G00227280
rosa_samantha Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 81
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 164, 362
AcoI YGGCCR 1 cut(s) 347
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 81, 183
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 246, 279
AluI AGCT 2 cut(s) 246, 279
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 222, 279
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 349
BauI CACGAG 1 cut(s) 190
BbvI GCAGC 2 cut(s) 234, 266
BceAI ACGGC 2 cut(s) 93, 301
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 3 cut(s) 15, 243, 267
BisI GCNGC 3 cut(s) 165, 223, 280
BlsI GCNGC 3 cut(s) 166, 224, 281
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 183
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 5 cut(s) 120, 237, 261, 350, 357
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 81, 183
BseNI ACTGG 5 cut(s) 120, 237, 261, 350, 357
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 2 cut(s) 234, 266
BshFI GGCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 2 cut(s) 219, 356
BslI CCNNNNNNNGG 2 cut(s) 81, 183
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 219, 356
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 216
BspACI CCGC 2 cut(s) 164, 362
BspANI GGCC 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 5 cut(s) 120, 237, 261, 350, 357
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 75
BssSI CACGAG 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 49, 161
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 234, 266
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 350
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 3 cut(s) 28, 81, 323
CviJI RGCY 7 cut(s) 61, 88, 167, 246, 279, 349, 356
CviKI_1 RGCY 7 cut(s) 61, 88, 167, 246, 279, 349, 356
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 31, 84, 326
FaqI GGGAC 2 cut(s) 219, 356
FatI CATG 3 cut(s) 27, 80, 322
FauNDI CATATG 2 cut(s) 109, 218
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 165, 223, 280
Fsp4HI GCNGC 3 cut(s) 165, 223, 280
FspBI CTAG 3 cut(s) 15, 243, 267
GluI GCNGC 3 cut(s) 165, 223, 280
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 327
Hin1II CATG 3 cut(s) 31, 84, 326
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 308, 313
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 5 cut(s) 67, 75, 189, 230, 367
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 5 cut(s) 67, 75, 189, 230, 367
HpyCH4III ACNGT 2 cut(s) 49, 161
HpyCH4V TGCA 2 cut(s) 222, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 3 cut(s) 31, 84, 326
KspAI GTTAAC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 2 cut(s) 234, 266
MaeI CTAG 3 cut(s) 15, 243, 267
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 2 cut(s) 22, 112
MnlI CCTC 2 cut(s) 21, 186
Mox20I TGGCCA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 349
MseI TTAA 2 cut(s) 333, 366
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeI CATATG 2 cut(s) 109, 218
NlaIII CATG 3 cut(s) 31, 84, 326
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 3 cut(s) 166, 224, 281
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 333, 366
SatI GCNGC 3 cut(s) 165, 223, 280
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 39, 132, 248, 281
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 1 cut(s) 253
SsiI CCGC 2 cut(s) 164, 362
SspMI CTAG 3 cut(s) 15, 243, 267
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 49, 161
TaqI TCGA 1 cut(s) 311
TaqII GACCGA 1 cut(s) 174
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 112
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 333, 366
Tru9I TTAA 2 cut(s) 333, 366
TscAI CASTG 2 cut(s) 232, 357
TseI GCWGC 2 cut(s) 222, 279
TspDTI ATGAA 2 cut(s) 16, 17
TspRI CASTG 2 cut(s) 232, 357
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 186
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 2 cut(s) 268, 301
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 3 cut(s) 15, 243, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.