RLG00000004853

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019974
Physical Location & Seq
Forward (+)
63081866 .. 63082364
499 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004853

Sequence Viewer

Length: 324 bp
ATGACTCAAGCCATCACATTTTTGCAAGACTTTAAGCTTGGTCACTACATGAAAATCCCTCCTAGAACTATGTTCATGGCACAGGTTTCATTACTTAGTTTGGACTTGCCCTATGGACACTCTTTTACGATGCGGCTGTCATCACCCCATATCGATCCACGAGGAATATCTGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCCTAGCTGGTGCAATTGCTCCAGTTCTAGTTTGGTTAGCTGCGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCAGTTCCAGATGCACCTGCTTCTGAGGGGTAG

Protein Analysis

108

Amino Acids

11.51

Weight (kDa)

5.35

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 29 2.3e-08 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0186281
rosa_laevigata RLG00000004853
rosa_multiflora Rmu_co8215358.1_g000001
rosa_roxburghii Rroxscaffold_3G00227280
rosa_samantha Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
Acc16I TGCGCA 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 149
AluBI AGCT 3 cut(s) 37, 215, 248
AluI AGCT 3 cut(s) 37, 215, 248
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 2 cut(s) 266, 290
ApeKI GCWGC 4 cut(s) 191, 248, 266, 269
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 185
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 4 cut(s) 203, 235, 253, 256
BccI CCATC 1 cut(s) 20
BfaI CTAG 4 cut(s) 63, 212, 236, 257
BfmI CTRYAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 5 cut(s) 134, 192, 249, 267, 270
BlsI GCNGC 5 cut(s) 135, 193, 250, 268, 271
BmsI GCATC 2 cut(s) 120, 292
BpmI CTGGAG 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 206, 230
BseCI ATCGAT 1 cut(s) 153
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 206, 230
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 4 cut(s) 203, 235, 253, 256
BshVI ATCGAT 1 cut(s) 153
BslFI GGGAC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 206, 230
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstAPI GCANNNNNTGC 2 cut(s) 266, 290
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 95, 315
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 290
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 4 cut(s) 203, 235, 253, 256
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 2 cut(s) 266, 290
CfoI GCGC 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 153
CviAII CATG 2 cut(s) 49, 76
CviJI RGCY 7 cut(s) 11, 37, 136, 215, 248, 266, 289
CviKI_1 RGCY 7 cut(s) 11, 37, 136, 215, 248, 266, 289
DdeI CTNAG 2 cut(s) 95, 315
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
FaeI CATG 2 cut(s) 52, 79
FaiI YATR 7 cut(s) 50, 71, 77, 114, 150, 187, 189
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 48, 75
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 5 cut(s) 134, 192, 249, 267, 270
Fsp4HI GCNGC 5 cut(s) 134, 192, 249, 267, 270
FspBI CTAG 4 cut(s) 63, 212, 236, 257
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 1 cut(s) 252
GluI GCNGC 5 cut(s) 134, 192, 249, 267, 270
GsuI CTGGAG 1 cut(s) 213
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 52, 79
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 25, 191, 221, 293, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 290
HpyF3I CTNAG 2 cut(s) 95, 315
Hsp92II CATG 2 cut(s) 52, 79
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 232, 277
LpnPI CCDG 7 cut(s) 68, 156, 187, 201, 243, 303, 312
Lsp1109I GCAGC 4 cut(s) 203, 235, 253, 256
LweI GCATC 2 cut(s) 120, 292
MaeI CTAG 4 cut(s) 63, 212, 236, 257
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 199
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 222
MnlI CCTC 4 cut(s) 69, 155, 256, 310
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 33
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 290
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 52, 79
NmuCI GTSAC 1 cut(s) 41
NsbI TGCGCA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 203
PkrI GCNGC 5 cut(s) 135, 193, 250, 268, 271
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 2 cut(s) 266, 290
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 5 cut(s) 134, 192, 249, 267, 270
Sau3AI GATC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 185
SetI ASST 5 cut(s) 39, 87, 217, 250, 310
SfaNI GCATC 2 cut(s) 120, 292
SfcI CTRYAG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 133
SspMI CTAG 4 cut(s) 63, 212, 236, 257
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 4 cut(s) 191, 248, 266, 269
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 64, 65, 78
TspRI CASTG 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 4 cut(s) 63, 212, 236, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.