Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019974

Physical Location & Seq

Genomic Coordinates Reverse (-)

11406562 .. 11412783

Gene Structure 6222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTGTTCAAATTATTAACAGGGAGATGTATGAGAAATACAAAGCTGCACATACTGGAAGGGTGGACATCCATACCAGATTGATGAGAAATTATAGAGACATACCTATCTGGTGGTTTCATATTCTGCTTTTGTTGTCGCTTGCACTCTCTCTGGCGTTATGCATTTTCATGAAAGATGAGGTACAACTGCCTTGGTGGGGACTCCTTTTTGCAGCTGCAATTGCATCGGTTTTCACTCTTCCGATTAGCGTTATAACGGCAACAACGAATCAGGCAATGCATAGGAACTGTGATAGCCGGAACAGTCAATATTGGGGTGGCATGGTGGCTGCTAACTACTGTGGAAAACATATGTCAGCAAAGTTTACTCCTCCTGATAGTCCTTGGACCTGTGCCAATGACGCTGTGTTTTTTGATGCCTCTGTAATTTGGGGTCTGGTCGGGCCAAAACGAATATTTGGCTCCCTTGGATACTACTCAGCACTTAACTGGTTCTTCCTTTTCGGTGCAATTGGACCTCTCATAGTATGGTTGTTGCATAAAGCTTTTCCAAGTCAAAAATGGATCGCGCTGATCAACCTTCCCGTGCTTTTGGGAGCAACGGCTGTAATGCCACCGGCTTCAACTGTGAACTTCAATTGCTGGATTATTGTTGGAGTTGTTTTCAATTTCTATGTCTTCAGATACAGAAAGACATGGTGGCAAAGGTACAATTATGTTCTTTCAGCTGCCTTAGATGCTGGAGTAGCTTTCATGGCGGTGCTTGTATATTTATCAATGAATGGTAAGGGCATATCTTGGTGGGGAACAGATGGGGAACACTGTGAGCTGGCTACCTGTCCAACAGCTGAAGGCTTGGATCTTGGTCATGCTTGTGTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

295

Amino Acids

33.31

Weight (kDa)

8.75

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	9 - 95	5.2e-19	OPT oligopeptide transporter protein
OPT	PF03169	124 - 260	2e-28	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186281
rosa_laevigata	RLG00000004853
rosa_multiflora	Rmu_co8215358.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227280
rosa_samantha	Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	1 cut(s)	572
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	2 cut(s)	575, 870
AcuI	CTGAAG	2 cut(s)	667, 873
AfaI	GTAC	2 cut(s)	186, 713
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	11, 627, 640, 670
AluBI	AGCT	7 cut(s)	47, 218, 548, 731, 752, 832, 851
AluI	AGCT	7 cut(s)	47, 218, 548, 731, 752, 832, 851
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	575, 870
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	5 cut(s)	47, 215, 218, 332, 731
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	3 cut(s)	390, 446, 518
AvaII	GGWCC	2 cut(s)	390, 518
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	5 cut(s)	34, 205, 227, 319, 718
BccI	CCATC	1 cut(s)	809
BceAI	ACGGC	2 cut(s)	276, 621
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	5 cut(s)	48, 216, 219, 333, 732
BlsI	GCNGC	5 cut(s)	49, 217, 220, 334, 733
Bme18I	GGWCC	2 cut(s)	390, 518
BmgT120I	GGNCC	3 cut(s)	390, 446, 518
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	3 cut(s)	236, 409, 730
BpiI	GAAGAC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	765
BsaJI	CCNNGG	3 cut(s)	194, 386, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	61, 497
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	194, 386, 469
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	61, 497
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	5 cut(s)	34, 205, 227, 319, 718
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	301, 620
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	567, 576, 862
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	575, 870
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	61, 497
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	3 cut(s)	194, 386, 469
BssMI	GATC	3 cut(s)	567, 576, 862
BssT1I	CCWWGG	3 cut(s)	194, 386, 469
Bst4CI	ACNGT	5 cut(s)	293, 308, 344, 631, 827
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	144, 834
BstDEI	CTNAG	2 cut(s)	481, 736
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	570, 579, 865
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	567, 576, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 404, 740, 749, 758
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	5 cut(s)	34, 205, 227, 319, 718
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	144, 834
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	574
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	390, 446, 518
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	185, 712
CviAII	CATG	5 cut(s)	172, 325, 699, 757, 872
CviQI	GTAC	2 cut(s)	185, 712
DdeI	CTNAG	2 cut(s)	481, 736
DpnI	GATC	3 cut(s)	569, 578, 864
DpnII	GATC	3 cut(s)	567, 576, 862
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	3 cut(s)	194, 386, 469
Eco47I	GGWCC	2 cut(s)	390, 518
Eco57I	CTGAAG	2 cut(s)	667, 873
EcoT14I	CCWWGG	3 cut(s)	194, 386, 469
EcoT22I	ATGCAT	2 cut(s)	167, 285
ErhI	CCWWGG	3 cut(s)	194, 386, 469
FaeI	CATG	5 cut(s)	175, 328, 702, 760, 875
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	5 cut(s)	171, 324, 698, 756, 871
FauNDI	CATATG	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	5 cut(s)	48, 216, 219, 333, 732
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	48, 216, 219, 333, 732
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	5 cut(s)	48, 216, 219, 333, 732
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	2 cut(s)	301, 620
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	5 cut(s)	175, 328, 702, 760, 875
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	2 cut(s)	204, 271
HpaII	CCGG	2 cut(s)	301, 620
Hpy166II	GTNNAC	3 cut(s)	67, 369, 634
Hpy188I	TCNGA	2 cut(s)	246, 686
Hpy188III	TCNNGA	2 cut(s)	172, 377
Hpy8I	GTNNAC	3 cut(s)	67, 369, 634
HpyAV	CCTTC	3 cut(s)	54, 593, 848
HpyCH4III	ACNGT	5 cut(s)	293, 308, 344, 631, 827
HpyCH4V	TGCA	9 cut(s)	50, 146, 165, 215, 221, 227, 283, 512, 541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 404, 740, 749, 758
HpyF3I	CTNAG	2 cut(s)	481, 736
Hsp92II	CATG	5 cut(s)	175, 328, 702, 760, 875
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	567, 576, 862
LmnI	GCTCC	2 cut(s)	470, 599
Lsp1109I	GCAGC	5 cut(s)	34, 205, 227, 319, 718
LweI	GCATC	3 cut(s)	236, 409, 730
MalI	GATC	3 cut(s)	569, 578, 864
MboI	GATC	3 cut(s)	567, 576, 862
MboII	GAAGA	3 cut(s)	233, 490, 673
MfeI	CAATTG	3 cut(s)	222, 513, 640
MflI	RGATCY	1 cut(s)	862
MluCI	AATT	8 cut(s)	12, 91, 222, 429, 513, 640, 670, 715
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	637, 869
MnlI	CCTC	4 cut(s)	175, 384, 433, 531
Mph1103I	ATGCAT	2 cut(s)	167, 285
MseI	TTAA	2 cut(s)	18, 489
MslI	CAYNNNNRTG	3 cut(s)	170, 761, 876
MspA1I	CMGCKG	3 cut(s)	218, 731, 851
MspI	CCGG	2 cut(s)	301, 620
MunI	CAATTG	3 cut(s)	222, 513, 640
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	5 cut(s)	224, 404, 740, 749, 758
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	3 cut(s)	567, 576, 862
NlaIII	CATG	5 cut(s)	175, 328, 702, 760, 875
NlaIV	GGNNCC	1 cut(s)	466
NsiI	ATGCAT	2 cut(s)	167, 285
PagI	TCATGA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	49, 217, 220, 334, 733
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	390, 446, 518
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	3 cut(s)	218, 731, 851
RsaI	GTAC	2 cut(s)	186, 713
RsaNI	GTAC	2 cut(s)	185, 712
RseI	CAYNNNNRTG	3 cut(s)	170, 761, 876
SaqAI	TTAA	2 cut(s)	18, 489
SatI	GCNGC	5 cut(s)	48, 216, 219, 333, 732
Sau3AI	GATC	3 cut(s)	567, 576, 862
Sau96I	GGNCC	3 cut(s)	390, 446, 518
SchI	GAGTC	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	236, 409, 730
SinI	GGWCC	2 cut(s)	390, 518
SmiMI	CAYNNNNRTG	3 cut(s)	170, 761, 876
Sse9I	AATT	8 cut(s)	12, 91, 222, 429, 513, 640, 670, 715
SsiI	CCGC	1 cut(s)	761
SspI	AATATT	2 cut(s)	314, 459
StyI	CCWWGG	3 cut(s)	194, 386, 469
TaaI	ACNGT	5 cut(s)	293, 308, 344, 631, 827
TasI	AATT	8 cut(s)	12, 91, 222, 429, 513, 640, 670, 715
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	18, 489
Tru9I	TTAA	2 cut(s)	18, 489
TscAI	CASTG	1 cut(s)	830
TseI	GCWGC	5 cut(s)	47, 215, 218, 332, 731
TspDTI	ATGAA	5 cut(s)	110, 160, 188, 745, 797
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	390, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
Zsp2I	ATGCAT	2 cut(s)	167, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.