Rh7AG068100

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019974
Physical Location & Seq
Forward (+)
4738059 .. 4738574
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG068100.1

Sequence Viewer

Length: 426 bp
ATGACTCCAGCCATCACATTTTTGCAAGACTTTAAGCTTGGTCACTACATGAAAATCCCTCCTAGAACTATGTTCATGGCACAGGTTGTTGGAACCCTTATCGCCGGGCTTGTCTACTTGTCCACGGCATGGTGGCTAATGGAGACCATTCCCCCATATGTACTGGCACAACATCAGTTTGGACTTGCCCTATGGACACTCTTTTACGATGCGGCTGTCATCACCCCATATCGGTCCACGAGGAATATCTGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCCTAGCTGGTGCAATTGCTCCAGTTCTAGTTTGGTTAGCCGCTACGGCATTTCCACAACAGAAGTGGATTCGACTCATCAACATACCGGTTTTAATAATCGCGACTGGCCACTGGCTACTGCGGTTAACTACACTTAG

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

6.95

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 4 - 74 1.4e-15 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019974)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0186281
rosa_laevigata RLG00000004853
rosa_multiflora Rmu_co8215358.1_g000001
rosa_roxburghii Rroxscaffold_3G00227280
rosa_samantha Rh7AG068100 Rh7BG083900 Rh7DG080500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 390
AciI CCGC 3 cut(s) 212, 328, 410
AcoI YGGCCR 1 cut(s) 395
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 129, 231
AgeI ACCGGT 1 cut(s) 374
AluBI AGCT 2 cut(s) 37, 294
AluI AGCT 2 cut(s) 37, 294
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 270
AsiGI ACCGGT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 397
BauI CACGAG 1 cut(s) 238
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 20
BceAI ACGGC 2 cut(s) 141, 349
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 63, 291, 315
BglI GCCNNNNNGGC 1 cut(s) 333
BisI GCNGC 3 cut(s) 213, 271, 328
BlsI GCNGC 3 cut(s) 214, 272, 329
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 231
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 5 cut(s) 168, 285, 309, 398, 405
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 129, 231
BseNI ACTGG 5 cut(s) 168, 285, 309, 398, 405
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 374
BsiSI CCGG 2 cut(s) 105, 375
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 129, 231
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 264
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 3 cut(s) 212, 328, 410
BspANI GGCC 1 cut(s) 397
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 5 cut(s) 168, 285, 309, 398, 405
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 123
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 123
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 280, 398
BtuMI TCGCGA 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 374
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 3 cut(s) 49, 76, 129
CviJI RGCY 9 cut(s) 11, 37, 109, 136, 215, 294, 327, 397, 404
CviKI_1 RGCY 9 cut(s) 11, 37, 109, 136, 215, 294, 327, 397, 404
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 234
FaeI CATG 3 cut(s) 52, 79, 132
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 48, 75, 128
FauNDI CATATG 2 cut(s) 157, 266
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 213, 271, 328
Fsp4HI GCNGC 3 cut(s) 213, 271, 328
FspBI CTAG 3 cut(s) 63, 291, 315
GluI GCNGC 3 cut(s) 213, 271, 328
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 397
HapII CCGG 2 cut(s) 105, 375
Hin1II CATG 3 cut(s) 52, 79, 132
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 4, 356, 361
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 2 cut(s) 105, 375
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 5 cut(s) 115, 123, 237, 278, 415
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 5 cut(s) 115, 123, 237, 278, 415
HpyCH4V TGCA 3 cut(s) 25, 270, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 3 cut(s) 52, 79, 132
KspAI GTTAAC 1 cut(s) 415
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 63, 291, 315
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 1 cut(s) 278
MfeI CAATTG 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 1 cut(s) 301
MluNI TGGCCA 1 cut(s) 397
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 69, 234
Mox20I TGGCCA 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 282
MscI TGGCCA 1 cut(s) 397
MseI TTAA 3 cut(s) 33, 381, 414
Msp20I TGGCCA 1 cut(s) 397
MspI CCGG 2 cut(s) 105, 375
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 301
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 333
NciI CCSGG 1 cut(s) 106
NdeI CATATG 2 cut(s) 157, 266
NlaIII CATG 3 cut(s) 52, 79, 132
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 41
NruI TCGCGA 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 129
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 3 cut(s) 214, 272, 329
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 234
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 33, 381, 414
SatI GCNGC 3 cut(s) 213, 271, 328
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 264
SetI ASST 3 cut(s) 39, 87, 296
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 234
Sse9I AATT 1 cut(s) 301
SsiI CCGC 3 cut(s) 212, 328, 410
SspMI CTAG 3 cut(s) 63, 291, 315
StyD4I CCNGG 1 cut(s) 104
TaqI TCGA 1 cut(s) 359
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 301
TatI WGTACW 1 cut(s) 160
TauI GCSGC 2 cut(s) 215, 330
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 33, 381, 414
Tru9I TTAA 3 cut(s) 33, 381, 414
TscAI CASTG 2 cut(s) 280, 405
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 64, 65
TspRI CASTG 2 cut(s) 280, 405
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 349
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 63, 291, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.