Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018035

Physical Location & Seq

Genomic Coordinates Reverse (-)

14428323 .. 14429294

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGGAATCAGAGAGGTTCAAGAAAATCCAGAAGAACAGGAAATGCTTTGCATACATTGGAATCTTCATTGTGTTCCAAATCATAGTCATGACCGTTTTCGGATTGACCGTGATGAAGATCAAAACCCCGAGCGTGAGGCTGAGGTCCGTGACTGTCCAAACCCTCGAAAGCACCTCCAATACTTCCTTCACCGCAACTCTCATTGCTGAAGTTACCGTGAAGAACAAGAATTTCGGGAGCTACAGGTTCGATGCCACTAAGGCTAATGTGACCTACGGGGATGTCACGCTGGGAAGTGGTGACATTATCAAGTCACGCGCCGGTTTGAAGAAGACGAAGAGATTGAATGTGACCATTGACGTAAACTCGAGTGGGGTGTCGGATAACAGCCTTGCCACTGAGCTGACTTCAGGGAATGTGACACTGACGGCTCTTTCGAGGGTGACTGGTAAGGTGTCATTGATGGGGATGATGAAGAAGAGGAAGACCGCGAATATGAACTGCTCGATGATTGTTAATGTTCCAAACAAGGTTGTTTACGATTTGACTTGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

186

Amino Acids

20.44

Weight (kDa)

10.12

Isoelectric Point (pI)

16.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018035)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03330
malus_domestica	MD06G1093300.v1.1 MD14G1114000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0196451
rosa_laevigata	RLG00000004014
rosa_multiflora	Rmu_co8342145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259310
rosa_rugosa	Rorug07G0033500
rosa_samantha	Rh7CG166100 Rh7DG159100
rosa_wichuraiana	Rw7G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	321, 494
AciI	CCGC	2 cut(s)	195, 492
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	231, 396
AgsI	TTSAA	3 cut(s)	22, 331, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	2 cut(s)	243, 406
AluI	AGCT	2 cut(s)	243, 406
Ama87I	CYCGRG	2 cut(s)	130, 370
ApoI	RAATTY	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	184, 314, 457
AvaI	CYCGRG	2 cut(s)	130, 370
AvaII	GGWCC	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	341, 494
BbvCI	CCTCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	2 cut(s)	130, 370
BmgT120I	GGNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	341, 494
Bpu10I	CCTNAGC	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	119
BseGI	GGATG	2 cut(s)	289, 477
BseJI	GATNNNNATC	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	134, 393
BseNI	ACTGG	1 cut(s)	454
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	321, 494
BsiHKCI	CYCGRG	2 cut(s)	130, 370
BsiSI	CCGG	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	130, 370
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	195, 492
BspCNI	CTCAG	2 cut(s)	135, 394
BspFNI	CGCG	2 cut(s)	321, 494
BspHI	TCATGA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	323
BssMI	GATC	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	97, 112, 157, 220
Bst6I	CTCTTC	2 cut(s)	335, 476
BstDEI	CTNAG	3 cut(s)	143, 261, 402
BstF5I	GGATG	2 cut(s)	289, 477
BstFNI	CGCG	2 cut(s)	321, 494
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	2 cut(s)	321, 494
BstV2I	GAAGAC	2 cut(s)	341, 494
BtsCI	GGATG	2 cut(s)	289, 477
BtsIMutI	CAGTG	2 cut(s)	399, 425
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	142, 243, 266, 393, 406, 434
CviKI_1	RGCY	6 cut(s)	142, 243, 266, 393, 406, 434
DdeI	CTNAG	3 cut(s)	143, 261, 402
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	335, 476
EarI	CTCTTC	2 cut(s)	335, 476
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	231, 396
Eco88I	CYCGRG	2 cut(s)	130, 370
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	55, 86, 92, 500
FatI	CATG	1 cut(s)	90
FokI	GGATG	2 cut(s)	296, 484
GlaI	GCGC	1 cut(s)	322
GsaI	CCCAGC	1 cut(s)	296
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	8, 63
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	184, 314, 457
Hpy166II	GTNNAC	2 cut(s)	367, 541
Hpy188I	TCNGA	3 cut(s)	13, 104, 385
Hpy188III	TCNNGA	4 cut(s)	22, 31, 91, 238
Hpy8I	GTNNAC	2 cut(s)	367, 541
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	4 cut(s)	97, 112, 157, 220
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	143, 261, 402
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	25, 44, 232, 278, 337, 399, 435
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	9 cut(s)	151, 214, 271, 286, 302, 315, 352, 421, 445
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MluCI	AATT	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	7 cut(s)	9, 132, 138, 176, 187, 435, 477
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	1 cut(s)	324
MvnI	CGCG	2 cut(s)	321, 494
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
PaeR7I	CTCGAG	1 cut(s)	370
PagI	TCATGA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 437
PfeI	GAWTC	2 cut(s)	8, 63
PspFI	CCCAGC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	195, 492
TaaI	ACNGT	4 cut(s)	97, 112, 157, 220
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	5 cut(s)	168, 252, 371, 440, 509
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	8, 63
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	406, 432
TseFI	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
Tsp45I	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
TspDTI	ATGAA	4 cut(s)	58, 131, 491, 515
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	406, 432
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.