RchiOBHm_Chr7g0199361

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018629
Physical Location & Seq
Forward (+)
17395403 .. 17395756
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGGCGGCTCTAATTCTGTCCTCGGATACTAGGGACACATCGGACGGCATCACCATCAAGGTGAAGGCCAATGTGATCGAAGTCGCAGGTCTGCGCAGGAAGTTCAACAGAAACTCCAAGCATACCAATTTGGACTTTGAACTCGTCCCTGAGAAGCCCATTGACAAGAAGAATCTCAAGATGGAGGCCTGGTTCGGTACCAGCAAGATCAGCGCCACCATCTGTTCCCCCCAAGCCGTTTTGAGCGACGTCCACACTTTTGCATCTTTGCGGACGTCCGCCTCTGATTCAGCCCGTATAAGCTTTATATATATATATATATATATATATAAGCTTTATTTATCATTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

9.44

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora Rmu_sc0004014.1_g000002
rosa_roxburghii Rroxscaffold_2G00111960
rosa_rugosa Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 252, 278
Acc16I TGCGCA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 3 cut(s) 5, 271, 279
AcyI GRCGYC 2 cut(s) 249, 275
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 2 cut(s) 106, 140
AjnI CCWGG 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 303, 334
AluI AGCT 2 cut(s) 303, 334
AoxI GGCC 2 cut(s) 66, 186
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 96, 215
AsuHPI GGTGA 2 cut(s) 43, 73
BanI GGYRCC 1 cut(s) 197
BccI CCATC 3 cut(s) 62, 175, 227
BceAI ACGGC 2 cut(s) 61, 221
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 1 cut(s) 19
BfaI CTAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 57, 272
BpuEI CTTGAG 1 cut(s) 161
BsaHI GRCGYC 2 cut(s) 249, 275
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 176, 206
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 68, 188
BshNI GGYRCC 1 cut(s) 197
BslFI GGGAC 2 cut(s) 47, 131
BsmFI GGGAC 2 cut(s) 47, 131
BsnI GGCC 2 cut(s) 68, 188
Bsp143I GATC 2 cut(s) 75, 207
BspACI CCGC 3 cut(s) 5, 271, 279
BspANI GGCC 2 cut(s) 68, 188
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 75, 207
BssNI GRCGYC 2 cut(s) 249, 275
Bst2UI CCWGG 1 cut(s) 190
BstACI GRCGYC 2 cut(s) 249, 275
BstDEI CTNAG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 96, 215
BstKTI GATC 2 cut(s) 78, 210
BstMBI GATC 2 cut(s) 75, 207
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 68, 188
BveI ACCTGC 1 cut(s) 77
CfoI GCGC 2 cut(s) 96, 215
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 8 cut(s) 8, 68, 157, 188, 236, 293, 303, 334
CviKI_1 RGCY 8 cut(s) 8, 68, 157, 188, 236, 293, 303, 334
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 77, 209
DpnII GATC 2 cut(s) 75, 207
EciI GGCGGA 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 188
FaqI GGGAC 2 cut(s) 47, 131
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 30
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 2 cut(s) 95, 214
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 68, 188
HhaI GCGC 2 cut(s) 96, 215
Hin1I GRCGYC 2 cut(s) 249, 275
Hin6I GCGC 2 cut(s) 94, 213
HinP1I GCGC 2 cut(s) 94, 213
HindIII AAGCTT 2 cut(s) 301, 332
HinfI GANTC 2 cut(s) 172, 287
HphI GGTGA 2 cut(s) 43, 73
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 25, 43, 286
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 249, 275
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 249, 275
Hsp92I GRCGYC 2 cut(s) 249, 275
HspAI GCGC 2 cut(s) 94, 213
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 75, 207
LpnPI CCDG 6 cut(s) 72, 82, 162, 175, 202, 214
LweI GCATC 2 cut(s) 57, 272
MaeI CTAG 1 cut(s) 30
MaeII ACGT 2 cut(s) 249, 275
MalI GATC 2 cut(s) 77, 209
MboI GATC 2 cut(s) 75, 207
MboII GAAGA 1 cut(s) 181
MluCI AATT 2 cut(s) 12, 127
MnlI CCTC 3 cut(s) 31, 178, 292
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 2 cut(s) 75, 207
NlaIV GGNNCC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 95
PceI AGGCCT 1 cut(s) 188
PfeI GAWTC 2 cut(s) 172, 287
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 75, 207
ScrFI CCNGG 1 cut(s) 190
SetI ASST 6 cut(s) 63, 91, 252, 278, 305, 336
SfaNI GCATC 2 cut(s) 57, 272
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 12, 127
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 3 cut(s) 5, 271, 279
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 252, 278
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 12, 127
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 172, 287
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
XspI CTAG 1 cut(s) 30
ZraI GACGTC 2 cut(s) 250, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.