Rh3BG201400

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018629
Physical Location & Seq
Forward (+)
17976307 .. 17976582
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG201400.1

Sequence Viewer

Length: 276 bp
ATGCCCTCACGCAGGCTCGGGGCGGCACCGATGGTGGCTTTGGTTCTGTCCTCGGAGACCAGGGACACCTCGGACGTGAGAGCCATCAAGTTGAGGGCTAAAGTGATCGAAGTCGGAGGTATGCGTCGAAAGTTCAACGAAAACTCTGACCAAACCAATTTCGACTTCGAACTCGACACTGAGGAGTCCACCGGCAAACTAATTTCGACTTCGATCACGTCTAGGGATGTCCTTGGTCTTCGAGGACAGAACCAGAGTCGCCCCAAGCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

9.8

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora Rmu_sc0004014.1_g000002
rosa_roxburghii Rroxscaffold_2G00111960
rosa_rugosa Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 2 cut(s) 76, 219
AjnI CCWGG 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
Alw26I GTCTC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 17
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 230
BccI CCATC 2 cut(s) 25, 92
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 17
BmgBI CACGTC 2 cut(s) 76, 219
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 4 cut(s) 51, 60, 69, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 4 cut(s) 51, 60, 69, 232
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 105, 213
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 4 cut(s) 51, 60, 69, 232
BssMI GATC 2 cut(s) 105, 213
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 108, 216
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 105, 213
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 230
BtrI CACGTC 2 cut(s) 76, 219
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 273
CviJI RGCY 5 cut(s) 16, 38, 83, 98, 268
CviKI_1 RGCY 5 cut(s) 16, 38, 83, 98, 268
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 107, 215
DpnII GATC 2 cut(s) 105, 213
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 276
FaiI YATR 2 cut(s) 122, 274
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 222
GluI GCNGC 1 cut(s) 24
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 276
HinfI GANTC 2 cut(s) 185, 256
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 4 cut(s) 55, 73, 116, 148
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 129
HpyCH4IV ACGT 2 cut(s) 75, 218
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 75, 218
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 105, 213
LpnPI CCDG 4 cut(s) 46, 73, 205, 266
MaeI CTAG 1 cut(s) 222
MaeII ACGT 2 cut(s) 75, 218
MalI GATC 2 cut(s) 107, 215
MboI GATC 2 cut(s) 105, 213
MboII GAAGA 1 cut(s) 230
MluCI AATT 2 cut(s) 157, 201
MlyI GAGTC 2 cut(s) 194, 265
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 7 cut(s) 16, 61, 79, 87, 110, 175, 236
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
NdeII GATC 2 cut(s) 105, 213
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 27
NspV TTCGAA 1 cut(s) 168
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 2 cut(s) 193, 264
PpsI GAGTC 2 cut(s) 193, 264
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 27
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 105, 213
SchI GAGTC 2 cut(s) 194, 265
ScrFI CCNGG 1 cut(s) 61
SetI ASST 4 cut(s) 71, 78, 121, 221
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 2 cut(s) 157, 201
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 2 cut(s) 78, 221
TaqI TCGA 8 cut(s) 108, 127, 162, 168, 174, 206, 212, 241
TasI AATT 2 cut(s) 157, 201
TauI GCSGC 1 cut(s) 26
TscAI CASTG 1 cut(s) 184
TspRI CASTG 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 10
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.