Rh7DG181500

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018629
Physical Location & Seq
Forward (+)
16780707 .. 16781359
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG181500.1

Sequence Viewer

Length: 312 bp
ATGGCGGCTCTAATTTTGTCCTCGGATACTAGGGACACATCGGACGACATCACCATCAAGGTGAAGGCCAACGTGATCGAAGTCGCAGGTCTGCGCAGGAAGTTCAACAGAAACTCCAAGCATACCAATTTGGACTTTGAACTCGTCCCTGAGAAGTCCATTGACAAGAAGAATCTCAAGATGGAGGCCTGGTTCGGTACCAGCAAGATCAGCGCCACCATCTGTTCCCCCCAAGCCGTTTTGAGCGACGTCCACACTTTTGCATCTTTGCAGACAACGACAGACAAAGACAAAAGCGATTTTGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

6.72

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora Rmu_sc0004014.1_g000002
rosa_roxburghii Rroxscaffold_2G00111960
rosa_rugosa Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
Acc16I TGCGCA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 3 cut(s) 106, 140, 305
AjnI CCWGG 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AoxI GGCC 2 cut(s) 66, 186
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 96, 215
AsuHPI GGTGA 2 cut(s) 43, 73
BanI GGYRCC 1 cut(s) 197
BccI CCATC 3 cut(s) 62, 175, 227
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 1 cut(s) 19
BfaI CTAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 176, 206
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 68, 188
BshNI GGYRCC 1 cut(s) 197
BslFI GGGAC 2 cut(s) 47, 131
BsmFI GGGAC 2 cut(s) 47, 131
BsnI GGCC 2 cut(s) 68, 188
Bsp143I GATC 2 cut(s) 75, 207
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 68, 188
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 75, 207
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 96, 215
BstKTI GATC 2 cut(s) 78, 210
BstMBI GATC 2 cut(s) 75, 207
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 68, 188
BveI ACCTGC 1 cut(s) 77
CfoI GCGC 2 cut(s) 96, 215
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 4 cut(s) 8, 68, 188, 236
CviKI_1 RGCY 4 cut(s) 8, 68, 188, 236
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 77, 209
DpnII GATC 2 cut(s) 75, 207
Eco147I AGGCCT 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 188
FaiI YATR 1 cut(s) 123
FaqI GGGAC 2 cut(s) 47, 131
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 30
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 2 cut(s) 95, 214
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 68, 188
HhaI GCGC 2 cut(s) 96, 215
Hin1I GRCGYC 1 cut(s) 249
Hin6I GCGC 2 cut(s) 94, 213
HinP1I GCGC 2 cut(s) 94, 213
HinfI GANTC 2 cut(s) 172, 305
HphI GGTGA 2 cut(s) 43, 73
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 25, 43
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 72, 249
HpyCH4V TGCA 2 cut(s) 263, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 72, 249
Hsp92I GRCGYC 1 cut(s) 249
HspAI GCGC 2 cut(s) 94, 213
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 75, 207
LpnPI CCDG 6 cut(s) 72, 82, 162, 175, 202, 214
LweI GCATC 1 cut(s) 272
MaeI CTAG 1 cut(s) 30
MaeII ACGT 2 cut(s) 72, 249
MalI GATC 2 cut(s) 77, 209
MboI GATC 2 cut(s) 75, 207
MboII GAAGA 1 cut(s) 181
MluCI AATT 2 cut(s) 12, 127
MnlI CCTC 2 cut(s) 31, 178
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 2 cut(s) 75, 207
NlaIV GGNNCC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 95
PceI AGGCCT 1 cut(s) 188
PfeI GAWTC 2 cut(s) 172, 305
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 75, 207
ScrFI CCNGG 1 cut(s) 190
SetI ASST 4 cut(s) 63, 75, 91, 252
SfaNI GCATC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 12, 127
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 75, 252
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 12, 127
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 172, 305
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
XspI CTAG 1 cut(s) 30
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.