Rh2DG188100

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018629
Physical Location & Seq
Reverse (-)
16816317 .. 16818537
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG188100.1

Sequence Viewer

Length: 333 bp
ATGCAAAAGTGCCGACGCCGCTCACTGAAGCTTAGGCCGGCGCTGAAGGCAACTCTGGTTCTGTCCTCAGAGACCAGGGACACCCCGAACGTGATCACCATCAAGTTGAGTGCCAATGTGATCGAAGTCGGAGGTATGCGTCGGAAGTTCAATAGAAACTTCGACCAAACCAATTTCGACTTCGAACTTGTCACTGAGGAGTCCACCGGCAAACCAATTTCGACTTCGATCAAGTCCGGGTGTACACAGAGCAACCAAGTCCAACTAATAGTCCTCCAAATCCGCATGTGCGCAGAGTTGAGGACTATGAGGTCAGACAGGACGTACCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

110

Amino Acids

12.57

Weight (kDa)

10.22

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora Rmu_sc0004014.1_g000002
rosa_roxburghii Rroxscaffold_2G00111960
rosa_rugosa Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
Acc16I TGCGCA 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 21
AciI CCGC 2 cut(s) 19, 283
AcuI CTGAAG 2 cut(s) 47, 65
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 2 cut(s) 244, 326
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 208, 240
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 65
AoxI GGCC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 43, 293
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 183
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 76, 238
BmrFI CCNGG 2 cut(s) 76, 238
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 75
Bse118I RCCGGY 2 cut(s) 37, 206
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 98
BseMII CTCAG 2 cut(s) 81, 186
BseRI GAGGAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 38, 207, 237
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 242
Bsp143I GATC 3 cut(s) 93, 120, 228
BspACI CCGC 2 cut(s) 19, 283
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 80, 187
BspT104I TTCGAA 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 37, 206
BsrGI TGTACA 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 37, 206
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 93, 120, 228
BssNI GRCGYC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 32, 67, 195
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 293
BstKTI GATC 3 cut(s) 96, 123, 231
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 93, 120, 228
BstMWI GCNNNNNNNGC 2 cut(s) 18, 47
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 74, 236
BsuRI GGCC 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 23, 192
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 2 cut(s) 43, 293
Cfr10I RCCGGY 2 cut(s) 37, 206
CseI GACGC 2 cut(s) 24, 128
Csp6I GTAC 2 cut(s) 243, 325
CviAII CATG 1 cut(s) 286
CviJI RGCY 2 cut(s) 31, 37
CviKI_1 RGCY 2 cut(s) 31, 37
CviQI GTAC 2 cut(s) 243, 325
DdeI CTNAG 3 cut(s) 32, 67, 195
DpnI GATC 3 cut(s) 95, 122, 230
DpnII GATC 3 cut(s) 93, 120, 228
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 47, 65
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 137, 287, 308
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 331
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 2 cut(s) 42, 292
GluI GCNGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 37
HapII CCGG 3 cut(s) 38, 207, 237
HgaI GACGC 2 cut(s) 24, 128
HhaI GCGC 2 cut(s) 43, 293
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 2 cut(s) 41, 291
HinP1I GCGC 2 cut(s) 41, 291
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 200
HpaII CCGG 3 cut(s) 38, 207, 237
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 204, 243, 245
Hpy188I TCNGA 4 cut(s) 70, 131, 144, 316
Hpy8I GTNNAC 3 cut(s) 204, 243, 245
Hpy99I CGWCG 2 cut(s) 18, 144
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 90, 323
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 47
HpyF3I CTNAG 3 cut(s) 32, 67, 195
HpySE526I ACGT 2 cut(s) 90, 323
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 2 cut(s) 41, 291
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 120, 228
LpnPI CCDG 7 cut(s) 41, 51, 61, 88, 220, 250, 304
MaeI CTAG 1 cut(s) 331
MaeII ACGT 2 cut(s) 90, 323
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 95, 122, 230
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 93, 120, 228
MluCI AATT 2 cut(s) 172, 216
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 109, 122, 286
MnlI CCTC 6 cut(s) 76, 125, 190, 284, 294, 303
MroNI GCCGGC 1 cut(s) 37
MspI CCGG 3 cut(s) 38, 207, 237
MspR9I CCNGG 2 cut(s) 76, 238
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 18, 47
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 238
NdeII GATC 3 cut(s) 93, 120, 228
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 292
NspI RCATGY 1 cut(s) 289
NspV TTCGAA 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
RsaI GTAC 2 cut(s) 244, 326
RsaNI GTAC 2 cut(s) 243, 325
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 3 cut(s) 93, 120, 228
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 76, 238
SetI ASST 5 cut(s) 33, 93, 136, 314, 326
SfuI TTCGAA 1 cut(s) 183
Sse9I AATT 2 cut(s) 172, 216
SsiI CCGC 2 cut(s) 19, 283
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 74, 236
TaiI ACGT 2 cut(s) 93, 326
TaqI TCGA 6 cut(s) 123, 162, 177, 183, 221, 227
TasI AATT 2 cut(s) 172, 216
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 21
TscAI CASTG 2 cut(s) 30, 199
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspRI CASTG 2 cut(s) 30, 199
XceI RCATGY 1 cut(s) 289
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.