Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004014.1

Orthogroup ID

OG0018629

Physical Location & Seq

Genomic Coordinates Reverse (-)

4436 .. 8086

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004014.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgctcgaggaggcacagatggtggtaatggttctgtcctcggagatcaaggacaccctggacggcgtcaccatcaagttgagggccaacatgatcgaagtcggaggtctacgctggaagttcaatagaaactctgagcaaactaatttctatttcgaactcgtcactgaggagtccaacggcaagaagaatctcaagatggaggcttggttaggcacaggcgagaccagagccgtcatcggcgtccgcgctttttcatatttgcgaatgtctgcctctgatccggcctgttctgcaatcgaccttggaatggcgaacagtaaccttccccggaggatcatcaaggaaactcagcgtctcctcagtgaacctgctccgggaattagtgcttcgccatcggaagacaatatgcggtatttcaatgtgatgatccttggcccgactcaatctccgtatgaaggaggagttttcaagttggaactatttttgcctgaagaatatccaatggctgcaccagagaagaagatagctgaattgaaggcatcaaggaaacaaagagccaaagctagtgctgccacaactgctaagtctgccaaagctgctgccacatctacctcaacaagcacaaggcctccaacctcaaccaaagcatcaaagggttggctccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022622 GO:0030154 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04120 ko04624 map04120 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

223

Amino Acids

24.48

Weight (kDa)

9.38

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora	Rmu_sc0004014.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111960
rosa_rugosa	Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha	Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	247, 412
AclWI	GGATC	3 cut(s)	275, 344, 424
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	66, 243
AfiI	CCNNNNNNNGG	3 cut(s)	310, 377, 458
AgsI	TTSAA	4 cut(s)	124, 421, 472, 538
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	530, 566, 599
AluI	AGCT	3 cut(s)	530, 566, 599
Alw26I	GTCTC	2 cut(s)	218, 362
AlwI	GGATC	3 cut(s)	275, 344, 424
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	4 cut(s)	84, 285, 436, 629
ApeKI	GCWGC	4 cut(s)	509, 572, 599, 602
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	84, 437
AsuC2I	CCSGG	2 cut(s)	331, 378
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	496, 559, 586, 589
BccI	CCATC	4 cut(s)	13, 80, 193, 403
BceAI	ACGGC	3 cut(s)	79, 196, 218
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	331, 378
BcoDI	GTCTC	2 cut(s)	218, 362
BfaI	CTAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	4 cut(s)	510, 573, 600, 603
BlsI	GCNGC	4 cut(s)	511, 574, 601, 604
Bme1390I	CCNGG	3 cut(s)	59, 331, 378
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	84, 437
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	3 cut(s)	59, 331, 378
BmsI	GCATC	2 cut(s)	551, 659
BpiI	GAAGAC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	331, 378
BsaHI	GRCGYC	2 cut(s)	66, 243
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	39, 57, 304, 329, 433
BsaXI	ACNNNNNCTCC	6 cut(s)	194, 224, 433, 463, 616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 377, 458
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	39, 57, 304, 329, 433
BseLI	CCNNNNNNNGG	3 cut(s)	310, 377, 458
BseMII	CTCAG	4 cut(s)	126, 159, 365, 376
BseRI	GAGGAG	4 cut(s)	23, 185, 350, 477
BseXI	GCAGC	4 cut(s)	496, 559, 586, 589
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	86, 287, 438, 631
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	284, 331, 377
BslI	CCNNNNNNNGG	3 cut(s)	310, 377, 458
BsmAI	GTCTC	2 cut(s)	218, 362
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	4 cut(s)	86, 287, 438, 631
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	45, 93, 280, 336, 429
BspACI	CCGC	2 cut(s)	247, 412
BspANI	GGCC	4 cut(s)	86, 287, 438, 631
BspCNI	CTCAG	4 cut(s)	127, 160, 364, 375
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	665
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	3 cut(s)	275, 344, 424
BspT104I	TTCGAA	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	39, 57, 304, 329, 433
BssMI	GATC	5 cut(s)	45, 93, 280, 336, 429
BssNI	GRCGYC	2 cut(s)	66, 243
BssT1I	CCWWGG	2 cut(s)	304, 433
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	2 cut(s)	66, 243
BstBI	TTCGAA	1 cut(s)	156
BstDEI	CTNAG	5 cut(s)	135, 168, 351, 362, 585
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	5 cut(s)	48, 96, 283, 339, 432
BstMAI	GTCTC	2 cut(s)	218, 362
BstMBI	GATC	5 cut(s)	45, 93, 280, 336, 429
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 572, 581, 590, 599
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	57, 329, 376
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	496, 559, 586, 589
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	86, 287, 438, 631
BtsIMutI	CAGTG	2 cut(s)	165, 370
BveI	ACCTGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	84, 437
CseI	GACGC	3 cut(s)	55, 232, 344
CviAII	CATG	1 cut(s)	91
DdeI	CTNAG	5 cut(s)	135, 168, 351, 362, 585
DpnI	GATC	5 cut(s)	47, 95, 282, 338, 431
DpnII	GATC	5 cut(s)	45, 93, 280, 336, 429
Eco130I	CCWWGG	2 cut(s)	304, 433
Eco147I	AGGCCT	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	304, 433
ErhI	CCWWGG	2 cut(s)	304, 433
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	92, 259, 410, 456
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	510, 573, 600, 603
Fsp4HI	GCNGC	4 cut(s)	510, 573, 600, 603
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	510, 573, 600, 603
HaeIII	GGCC	4 cut(s)	86, 287, 438, 631
HapII	CCGG	3 cut(s)	284, 331, 377
HgaI	GACGC	3 cut(s)	55, 232, 344
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	2 cut(s)	66, 243
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	173, 190, 442
HpaII	CCGG	3 cut(s)	284, 331, 377
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	110, 368
Hpy188I	TCNGA	5 cut(s)	43, 104, 136, 280, 400
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	110, 368
HpyAV	CCTTC	3 cut(s)	335, 452, 532
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	296, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 572, 581, 590, 599
HpyF3I	CTNAG	5 cut(s)	135, 168, 351, 362, 585
Hsp92I	GRCGYC	2 cut(s)	66, 243
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	45, 93, 280, 336, 429
LmnI	GCTCC	2 cut(s)	379, 669
Lsp1109I	GCAGC	4 cut(s)	496, 559, 586, 589
LweI	GCATC	2 cut(s)	551, 659
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	3 cut(s)	67, 163, 320
MalI	GATC	5 cut(s)	47, 95, 282, 338, 431
MboI	GATC	5 cut(s)	45, 93, 280, 336, 429
MboII	GAAGA	5 cut(s)	199, 413, 506, 532, 535
MluCI	AATT	3 cut(s)	145, 381, 533
MlyI	GAGTC	2 cut(s)	182, 436
MmeI	TCCRAC	4 cut(s)	82, 201, 456, 659
MspI	CCGG	3 cut(s)	284, 331, 377
MspR9I	CCNGG	3 cut(s)	59, 331, 378
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	293, 572, 581, 590, 599
NciI	CCSGG	2 cut(s)	331, 378
NdeII	GATC	5 cut(s)	45, 93, 280, 336, 429
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	2 cut(s)	67, 163
NspV	TTCGAA	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	190
PflFI	GACNNNGTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	511, 574, 601, 604
PleI	GAGTC	2 cut(s)	181, 436
PpsI	GAGTC	2 cut(s)	181, 436
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	2 cut(s)	84, 437
PspXI	VCTCGAGB	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	65
SatI	GCNGC	4 cut(s)	510, 573, 600, 603
Sau3AI	GATC	5 cut(s)	45, 93, 280, 336, 429
Sau96I	GGNCC	2 cut(s)	84, 437
SchI	GAGTC	2 cut(s)	182, 436
ScrFI	CCNGG	3 cut(s)	59, 331, 378
SetI	ASST	9 cut(s)	109, 306, 327, 373, 532, 568, 601, 617, 641
SfaNI	GCATC	2 cut(s)	551, 659
Sfr274I	CTCGAG	1 cut(s)	5
SfuI	TTCGAA	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	5, 194
SmoI	CTYRAG	2 cut(s)	5, 194
Sse9I	AATT	3 cut(s)	145, 381, 533
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	2 cut(s)	247, 412
SspMI	CTAG	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	3 cut(s)	57, 329, 376
StyI	CCWWGG	2 cut(s)	304, 433
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	4 cut(s)	6, 96, 156, 300
TasI	AATT	3 cut(s)	145, 381, 533
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	2 cut(s)	172, 370
TseFI	GTSAC	2 cut(s)	67, 163
TseI	GCWGC	4 cut(s)	509, 572, 599, 602
Tsp45I	GTSAC	2 cut(s)	67, 163
TspDTI	ATGAA	2 cut(s)	246, 471
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	172, 370
Tth111I	GACNNNGTC	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.