Rorug03G0298500

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018629
Physical Location & Seq
Forward (+)
31012170 .. 31013209
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0298500.1

Sequence Viewer

Length: 738 bp
ATGAGCGTATATAGAGATGTAGTTACCAGGACTGCATTGGGTAGTGGGTATGTCACGTCTGGCCAGATTGTGATTGCACGCCAACTGTTCGATGAAATGCCTGACAAGAATGCGGTTTCTTGGAGCGCTATGATTAACGGGTACCTGAATTTGGGGTTGTTAGAGAGGCCTTGGAGCTTTTTGCTGATATGCAGACTGCTGGTGTTTTTCCTAACCATGCCGGGATTGTCGGTCCGCTCACTGCCTGTGCTTTTGTTGGTGATTCGATCAGGGAAGTGTGGTTGTGTTAAAACCGCTCGTGCTGTGTTTGATGAGATGCCGGAGACTGATGTGTTTGCTTTTACTTCTTTAATTTCAGGCCTTGCTAATAATGGTGAGAGTGCCAGTGCCATTTCGTTGTTTGTGAGAGTGAAGAATGAGGGAATTCCACCTAATGAAGTTACATTTTCTGAGTGGGGATGGTGGATGAGTTATTGCAAATCTTCAGAACCAGGGGTCCAGCATTATGGTTGTTTGGTAGATTTACTGGGGAGAGCTGGGATGCTAGAGGAGGCTATGAAGGTTGTGACAGAGATGCCAATGGAGCCAGACTTGTCCGTCTTGGGTGCATTGCTCAATGTCTGTACTGTTCATGGAGATCTTGATTTGGCAAAAGAAATGGCGGAGCGCTTCACTGGGCAAAGATTAATTAGATCACAGCGGTGTGCTTGTTCTTCCTTCAAATATCCATGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

245

Amino Acids

27.05

Weight (kDa)

5.78

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 108 - 150 8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 110 - 150 5.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303521 RchiOBHm_Chr7g0199361
rosa_multiflora Rmu_sc0004014.1_g000002
rosa_roxburghii Rroxscaffold_2G00111960
rosa_rugosa Rorug01G0281700 Rorug03G0298500 Rorug05G0123200
rosa_samantha Rh2DG188100 Rh3BG201400 Rh7DG181500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 596
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccBSI CCGCTC 2 cut(s) 237, 296
AciI CCGC 5 cut(s) 113, 235, 294, 662, 700
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 148, 423
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 143, 625
AfeI AGCGCT 2 cut(s) 127, 668
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 721
AjiI CACGTC 1 cut(s) 57
AjnI CCWGG 2 cut(s) 26, 490
AleI CACNNNNGTG 1 cut(s) 700
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 2 cut(s) 177, 536
AluI AGCT 2 cut(s) 177, 536
Alw26I GTCTC 1 cut(s) 317
Aor51HI AGCGCT 2 cut(s) 127, 668
AoxI GGCC 3 cut(s) 61, 167, 358
ApoI RAATTY 2 cut(s) 148, 423
AseI ATTAAT 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 2 cut(s) 128, 669
AspS9I GGNCC 2 cut(s) 232, 496
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 271, 386
AvaII GGWCC 2 cut(s) 232, 496
BalI TGGCCA 1 cut(s) 63
BanI GGYRCC 1 cut(s) 141
BauI CACGAG 1 cut(s) 297
BccI CCATC 1 cut(s) 453
BciT130I CCWGG 2 cut(s) 28, 492
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 2 cut(s) 129, 670
BglII AGATCT 1 cut(s) 637
Bme1390I CCNGG 3 cut(s) 28, 222, 492
Bme18I GGWCC 2 cut(s) 232, 496
BmgBI CACGTC 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 232, 496
BmiI GGNNCC 3 cut(s) 143, 497, 585
BmrFI CCNGG 3 cut(s) 28, 222, 492
BmrI ACTGGG 2 cut(s) 536, 684
BmsI GCATC 3 cut(s) 306, 531, 564
BmuI ACTGGG 2 cut(s) 536, 684
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 170, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 3 cut(s) 384, 531, 679
Bse3DI GCAATG 1 cut(s) 608
BseBI CCWGG 2 cut(s) 28, 492
BseDI CCNNGG 2 cut(s) 170, 491
BseGI GGATG 3 cut(s) 464, 471, 546
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 384, 531, 679
BseRI GAGGAG 1 cut(s) 563
BseYI CCCAGC 1 cut(s) 536
BshFI GGCC 3 cut(s) 63, 169, 360
BshNI GGYRCC 1 cut(s) 141
BsiSI CCGG 2 cut(s) 221, 320
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 3 cut(s) 63, 169, 360
Bsp143I GATC 3 cut(s) 266, 637, 692
BspACI CCGC 5 cut(s) 113, 235, 294, 662, 700
BspANI GGCC 3 cut(s) 63, 169, 360
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 143, 497, 585
BspT107I GGYRCC 1 cut(s) 141
BsrBI CCGCTC 2 cut(s) 237, 296
BsrDI GCAATG 1 cut(s) 608
BsrI ACTGG 3 cut(s) 384, 531, 679
BssECI CCNNGG 2 cut(s) 170, 491
BssMI GATC 3 cut(s) 266, 637, 692
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 28, 492
Bst4CI ACNGT 2 cut(s) 87, 628
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 464, 471, 546
BstH2I RGCGCY 2 cut(s) 129, 670
BstHHI GCGC 2 cut(s) 128, 669
BstKTI GATC 3 cut(s) 269, 640, 695
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 3 cut(s) 266, 637, 692
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 2 cut(s) 28, 492
BstSCI CCNGG 3 cut(s) 26, 220, 490
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 3 cut(s) 63, 169, 360
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 3 cut(s) 464, 471, 546
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 239, 391, 672
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 2 cut(s) 128, 669
Cfr13I GGNCC 2 cut(s) 232, 496
CpoI CGGWCCG 1 cut(s) 232
Csp6I GTAC 2 cut(s) 142, 624
CspI CGGWCCG 1 cut(s) 232
CviAII CATG 3 cut(s) 217, 632, 729
CviJI RGCY 7 cut(s) 63, 169, 177, 360, 536, 554, 586
CviKI_1 RGCY 7 cut(s) 63, 169, 177, 360, 536, 554, 586
CviQI GTAC 2 cut(s) 142, 624
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 268, 639, 694
DpnII GATC 3 cut(s) 266, 637, 692
DrdI GACNNNNNNGTC 1 cut(s) 596
DseDI GACNNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 1 cut(s) 61
EciI GGCGGA 1 cut(s) 677
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 2 cut(s) 169, 360
Eco47I GGWCC 2 cut(s) 232, 496
Eco47III AGCGCT 2 cut(s) 127, 668
Eco57I CTGAAG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 26, 490
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 220, 635, 732
FatI CATG 3 cut(s) 216, 631, 728
FokI GGATG 3 cut(s) 471, 478, 553
FspBI CTAG 1 cut(s) 545
GlaI GCGC 2 cut(s) 127, 668
GsaI CCCAGC 1 cut(s) 540
HaeII RGCGCY 2 cut(s) 129, 670
HaeIII GGCC 3 cut(s) 63, 169, 360
HapII CCGG 2 cut(s) 221, 320
HhaI GCGC 2 cut(s) 128, 669
Hin1II CATG 3 cut(s) 220, 635, 732
Hin6I GCGC 2 cut(s) 126, 667
HinP1I GCGC 2 cut(s) 126, 667
HinfI GANTC 1 cut(s) 262
HpaII CCGG 2 cut(s) 221, 320
HphI GGTGA 2 cut(s) 271, 386
Hpy188I TCNGA 3 cut(s) 451, 487, 737
Hpy188III TCNNGA 1 cut(s) 641
HpyAV CCTTC 2 cut(s) 553, 727
HpyCH4III ACNGT 2 cut(s) 87, 628
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 35, 77, 192, 477, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 3 cut(s) 220, 635, 732
HspAI GCGC 2 cut(s) 126, 667
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 266, 637, 692
LmnI GCTCC 4 cut(s) 123, 174, 583, 664
LweI GCATC 3 cut(s) 306, 531, 564
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 22, 52, 439, 565
MalI GATC 3 cut(s) 268, 639, 694
MbiI CCGCTC 2 cut(s) 237, 296
MboI GATC 3 cut(s) 266, 637, 692
MboII GAAGA 3 cut(s) 424, 474, 705
MflI RGATCY 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 4 cut(s) 148, 351, 423, 687
MluNI TGGCCA 1 cut(s) 63
MnlI CCTC 4 cut(s) 159, 412, 541, 544
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
MseI TTAA 4 cut(s) 135, 288, 350, 686
MslI CAYNNNNRTG 1 cut(s) 700
Msp20I TGGCCA 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 2 cut(s) 221, 320
MspR9I CCNGG 3 cut(s) 28, 222, 492
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 28, 492
MwoI GCNNNNNNNGC 1 cut(s) 583
NciI CCSGG 1 cut(s) 222
NdeII GATC 3 cut(s) 266, 637, 692
NlaIII CATG 3 cut(s) 220, 635, 732
NlaIV GGNNCC 3 cut(s) 143, 497, 585
NmuCI GTSAC 2 cut(s) 52, 565
OliI CACNNNNGTG 1 cut(s) 700
PceI AGGCCT 2 cut(s) 169, 360
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 26, 490
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 26, 490
PspN4I GGNNCC 3 cut(s) 143, 497, 585
PspPI GGNCC 2 cut(s) 232, 496
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 2 cut(s) 143, 625
RsaNI GTAC 2 cut(s) 142, 624
RseI CAYNNNNRTG 1 cut(s) 700
Rsr2I CGGWCCG 1 cut(s) 232
RsrII CGGWCCG 1 cut(s) 232
SaqAI TTAA 4 cut(s) 135, 288, 350, 686
Sau3AI GATC 3 cut(s) 266, 637, 692
Sau96I GGNCC 2 cut(s) 232, 496
ScrFI CCNGG 3 cut(s) 28, 222, 492
SetI ASST 6 cut(s) 59, 147, 179, 433, 538, 564
SfaNI GCATC 3 cut(s) 306, 531, 564
SinI GGWCC 2 cut(s) 232, 496
SmiMI CAYNNNNRTG 1 cut(s) 700
Sse9I AATT 4 cut(s) 148, 351, 423, 687
SseBI AGGCCT 2 cut(s) 169, 360
SsiI CCGC 5 cut(s) 113, 235, 294, 662, 700
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 2 cut(s) 169, 360
StyD4I CCNGG 3 cut(s) 26, 220, 490
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 87, 628
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 90, 265
TaqII GACCGA 1 cut(s) 220
TasI AATT 4 cut(s) 148, 351, 423, 687
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 4 cut(s) 135, 288, 350, 686
Tru9I TTAA 4 cut(s) 135, 288, 350, 686
TscAI CASTG 3 cut(s) 246, 391, 679
TseFI GTSAC 2 cut(s) 52, 565
Tsp45I GTSAC 2 cut(s) 52, 565
TspDTI ATGAA 4 cut(s) 108, 450, 572, 620
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 3 cut(s) 246, 391, 679
VpaK11BI GGWCC 2 cut(s) 232, 496
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 2 cut(s) 148, 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.