RchiOBHm_Chr7g0209051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019299
Physical Location & Seq
Forward (+)
26441213 .. 26442713
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGATAACGGAGCACTTTACAAAGACGTTTCTGAGGAGCTGGCAACTACGAGGGAGTTGCTCATTGCGATTTCTCACCCTACTGCAGATCAGGTCCGCAATTTGAGTTTCGTGCCTGTGGACGTGGTTGATGTGTCAAATGGCGATGTCTCGGAGCAGTACCGGTCTGAACTGATATCTATTTCTTGTGAGTCCCCAGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.45

Weight (kDa)

4.05

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 7 - 68 1.6e-15 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019299)

Species Orthologous Gene IDs
prunus_persica Prupe.5G041600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209051
rosa_roxburghii Rroxscaffold_3G00249800
rosa_rugosa Rorug07G0108400 Rorug07G0108500
rosa_samantha Rh7AG243000 Rh7BG238000 Rh7CG258200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AfaI GTAC 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 154
AsiGI ACCGGT 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
BssMI GATC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 160
CspAI ACCGGT 1 cut(s) 162
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 94
EcoRV GATATC 1 cut(s) 177
FaiI YATR 2 cut(s) 203, 205
FaqI GGGAC 1 cut(s) 178
HapII CCGG 1 cut(s) 163
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 34, 154, 169
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 27, 123
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 27, 123
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 11, 37, 154
LpnPI CCDG 4 cut(s) 26, 77, 129, 176
MaeII ACGT 2 cut(s) 27, 123
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 2 cut(s) 28, 45
MspI CCGG 1 cut(s) 163
NdeII GATC 1 cut(s) 88
PinAI ACCGGT 1 cut(s) 162
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 16
SetI ASST 4 cut(s) 30, 42, 96, 126
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 9 cut(s) 53, 63, 104, 124, 128, 136, 163, 175, 198
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 97
TaiI ACGT 2 cut(s) 30, 126
TasI AATT 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.