RchiOBHm_Chr7g0212881

complex. Subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012323
Physical Location & Seq
Reverse (-)
30045673 .. 30048690
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGAGCGAGAGGTGATTCAAGCAGAGCTGGTGTTGCCAAACAAGCTGAGCTTCAAGAGGGTTCAGATGAATGAGAAGTACCCAAAAGGCCAGCCCAGAGGGAGATGGAAGCACCTCAAACAGATCATTCAGGCCGAGAATTATCACAACTACCCTCCTGATGAACCCAATTATGTTAATATAGAGTCGCCACCCTCTATGCATCCGTGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCTTACTACGATCCAAGAACCAACCTGCGCTACGCCAACGCAGAAATCTTCAAGCAAATAAGATCGCTTCCCAATGAATATGTTCAAAGATATCTGGCTCTGAGAAATGCTGCTGTCGTTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YL1_C

Protein Analysis

123

Amino Acids

14.6

Weight (kDa)

9.37

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1_C PF08265 73 - 101 2.6e-15 YL1 nuclear protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 241
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 5 cut(s) 20, 55, 295, 329, 367
AluBI AGCT 3 cut(s) 28, 46, 51
AluI AGCT 3 cut(s) 28, 46, 51
AlwI GGATC 1 cut(s) 248
AoxI GGCC 2 cut(s) 88, 132
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 276
BisI GCNGC 1 cut(s) 354
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 211
Bpu1102I GCTNAGC 1 cut(s) 47
BseGI GGATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 38, 335
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 2 cut(s) 90, 134
BshNI GGYRCC 1 cut(s) 241
BsnI GGCC 2 cut(s) 90, 134
Bsp143I GATC 3 cut(s) 123, 253, 305
Bsp1720I GCTNAGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 90, 134
BspCNI CTCAG 2 cut(s) 39, 336
BspLI GGNNCC 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 241
BssMI GATC 3 cut(s) 123, 253, 305
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 47, 344
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 126, 256, 308
BstMBI GATC 3 cut(s) 123, 253, 305
BstMWI GCNNNNNNNGC 2 cut(s) 34, 43
BstV1I GCAGC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 90, 134
BtsCI GGATG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 7 cut(s) 28, 46, 51, 90, 94, 134, 341
CviKI_1 RGCY 7 cut(s) 28, 46, 51, 90, 94, 134, 341
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 47, 344
DpnI GATC 3 cut(s) 125, 255, 307
DpnII GATC 3 cut(s) 123, 253, 305
Eco32I GATATC 1 cut(s) 335
EcoRV GATATC 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 204
FaiI YATR 6 cut(s) 174, 182, 200, 227, 237, 324
FalI AAGNNNNNCTT 2 cut(s) 35, 67
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 354
GlaI GCGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 2 cut(s) 90, 134
HhaI GCGC 1 cut(s) 273
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 2 cut(s) 16, 185
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 66, 345
Hpy188III TCNNGA 2 cut(s) 55, 158
HpyCH4V TGCA 2 cut(s) 202, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 43
HpyF3I CTNAG 2 cut(s) 47, 344
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 3 cut(s) 123, 253, 305
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 14, 104, 109, 116, 171, 216, 281, 323
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 211
MalI GATC 3 cut(s) 125, 255, 307
MboI GATC 3 cut(s) 123, 253, 305
MboII GAAGA 1 cut(s) 283
MluCI AATT 3 cut(s) 139, 169, 216
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 7 cut(s) 4, 51, 92, 125, 165, 205, 232
Mph1103I ATGCAT 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 34, 43
NdeII GATC 3 cut(s) 123, 253, 305
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 123, 253, 305
SchI GAGTC 1 cut(s) 194
SetI ASST 7 cut(s) 15, 30, 48, 53, 117, 247, 270
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 3 cut(s) 139, 169, 216
TasI AATT 3 cut(s) 139, 169, 216
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 83, 177, 333
TspGWI ACGGA 1 cut(s) 195
XapI RAATTY 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.