Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Reverse (-)

36791675 .. 36792302

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTCAAGGTAAGGAAGCAAGTGAAGGATATTCTGATACAGATGGGACGTGAGGAGATGGCTACTAACAATTATGTCGATAGCAGCTTCTGGAAATTCGACGCACTCTTCCAGCCGCAGCAACACCCTGCTCGTCATTCGCACGATACATTCTTCTTGAAAACCCCTTCAACTACCAGGAAGCTTCCAGAAGATTATGTTGAGTGCATGAGTGTGGTGGTTTTGACTTTTGAGTCCAGGGGATATGGTTGTGATTGGAAAAGCTTTACTCCCAAAAAGTACTTCTCTACTGATCGTTTTCACCAGATAGAAGGTTGTATATGTGACCGAGGCCTTACTCTTGGTGACTTGATGGGAGTCCTTGAAGACTTCTTCTCGAGGCTGGGTATGTCCAAGCTGAAATTCAAGCCAGCTTATAATCCTTATCAGAGCCTAGCATGGAGATTTTCGGCCATTTGGGAAGTGGGTGGAGATTGGAAATTCTGGCATGTTCAGGCCAGAAATGTTGCATCCTATGGGGGTTCTGGAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

178

Amino Acids

20.74

Weight (kDa)

8.95

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	3 - 152	1.9e-29	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AasI	GACNNNNNNGTC	1 cut(s)	232
AciI	CCGC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	95, 401, 479
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	160, 171, 365, 406
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	176, 236
AjuI	GAANNNNNNNTTGG	4 cut(s)	266, 298, 386, 418
AluBI	AGCT	5 cut(s)	87, 184, 264, 397, 413
AluI	AGCT	5 cut(s)	87, 184, 264, 397, 413
AlwNI	CAGNNNCTG	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	3 cut(s)	331, 450, 495
ApeKI	GCWGC	2 cut(s)	84, 118
ApoI	RAATTY	3 cut(s)	95, 401, 479
AsuHPI	GGTGA	2 cut(s)	293, 356
AvaI	CYCGRG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	96, 130
BccI	CCATC	3 cut(s)	37, 52, 346
BciT130I	CCWGG	2 cut(s)	178, 238
BfaI	CTAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	85, 116, 119
BlsI	GCNGC	3 cut(s)	86, 117, 120
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	178, 238
BmeT110I	CYCGRG	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	178, 238
BmsI	GCATC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	237, 328
BseBI	CCWGG	2 cut(s)	178, 238
BseDI	CCNNGG	2 cut(s)	237, 328
BseGI	GGATG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	96, 130
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	333, 452, 497
BsiHKCI	CYCGRG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	333, 452, 497
BsoBI	CYCGRG	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	333, 452, 497
BssECI	CCNNGG	2 cut(s)	237, 328
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	178, 238
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	509
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	178, 238
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	176, 236
BstV1I	GCAGC	2 cut(s)	96, 130
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	333, 452, 497
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	90
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	208, 438, 488
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	176, 236
FaeI	CATG	3 cut(s)	211, 441, 491
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	207, 437, 487
Fnu4HI	GCNGC	3 cut(s)	85, 116, 119
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	3 cut(s)	85, 116, 119
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	85, 116, 119
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	333, 452, 497
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	211, 441, 491
HindIII	AAGCTT	2 cut(s)	182, 262
HinfI	GANTC	2 cut(s)	233, 357
HphI	GGTGA	2 cut(s)	293, 356
Hpy188I	TCNGA	2 cut(s)	36, 429
Hpy188III	TCNNGA	5 cut(s)	91, 157, 188, 376, 525
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	19, 177, 305
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	207, 509
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	211, 441, 491
Kzo9I	GATC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	96, 130
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	323, 344
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	5 cut(s)	100, 145, 203, 364, 377
MluCI	AATT	4 cut(s)	70, 95, 401, 479
MlyI	GAGTC	2 cut(s)	242, 366
MnlI	CCTC	3 cut(s)	46, 323, 372
MslI	CAYNNNNRTG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	178, 238
MvaI	CCWGG	2 cut(s)	178, 238
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	211, 441, 491
NmuCI	GTSAC	2 cut(s)	323, 344
NspI	RCATGY	1 cut(s)	491
PaeR7I	CTCGAG	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	333
PkrI	GCNGC	3 cut(s)	86, 117, 120
PleI	GAGTC	2 cut(s)	241, 365
PpsI	GAGTC	2 cut(s)	241, 365
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	176, 236
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	176, 236
PstNI	CAGNNNCTG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	3 cut(s)	85, 116, 119
Sau3AI	GATC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	242, 366
ScrFI	CCNGG	2 cut(s)	178, 238
SetI	ASST	8 cut(s)	12, 52, 89, 186, 266, 316, 399, 415
SfaNI	GCATC	1 cut(s)	518
Sfr274I	CTCGAG	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	5, 376
SmoI	CTYRAG	2 cut(s)	5, 376
Sse9I	AATT	4 cut(s)	70, 95, 401, 479
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	176, 236
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	78, 99, 377
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	4 cut(s)	70, 95, 401, 479
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	323, 344
TseI	GCWGC	2 cut(s)	84, 118
Tsp45I	GTSAC	2 cut(s)	323, 344
XapI	RAATTY	3 cut(s)	95, 401, 479
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	376
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.