Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Reverse (-)

37630903 .. 37633450

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG337000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGACGTGAGGAGATGGCTACTAACAATTATGTCGATAGCAGCTTCTGGAAATTCGACGCACTCTTCCAACCGCAGCAACACCCTGCTCGTCATTCGCACGATACATTCTTCTTGAAAACCCCTTCAACTACCAGGAAGCTTCCAGAAGATTATGTTGAGTGCATGAGTGTGGTGGTTTTGTGTCCAGGGGAAATGGTTGTGATTGGAAAAGCTTTACTCCCAAAAAGTACTTCTCTACTGATAGTGTGTTCCCGAAACGAATCAGTAGATCCAACACATCTTGCAGAGTTTCACCAAATAGAAGGTTGTATATGTGACCGAGGCCTTACTCTTGGTGACTTGATGGGAGTCCCTGAAGACTTCTTCTCGAGGCTGAGTATGTCCGAGCTGAAATTCAAGCCAGCTTATAATCCTTATACAGAGCCTAGCATGGAGATTTTTGGCTATCACAAGGGTTTTGGGAAGTGGGTGGAGATTGGAAAATCTGGCATGTTCAAGCCAGAAATGTTGCATCCTATGGGGGTTCCGGAAGATGTTGAGGTTATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

184

Amino Acids

20.78

Weight (kDa)

5.33

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	2 - 184	2.3e-45	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	53, 395
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	118, 129, 400, 499
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	134, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	5 cut(s)	45, 142, 215, 391, 407
AluI	AGCT	5 cut(s)	45, 142, 215, 391, 407
AlwI	GGATC	1 cut(s)	266
AlwNI	CAGNNNCTG	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	42, 76
ApoI	RAATTY	2 cut(s)	53, 395
AsuHPI	GGTGA	2 cut(s)	287, 350
AvaI	CYCGRG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	54, 88
BccI	CCATC	2 cut(s)	10, 340
BciT130I	CCWGG	2 cut(s)	136, 189
BfaI	CTAG	2 cut(s)	429, 553
BisI	GCNGC	2 cut(s)	43, 77
BlsI	GCNGC	2 cut(s)	44, 78
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	136, 189
BmeT110I	CYCGRG	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	2 cut(s)	136, 189
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	188, 322
BsaWI	WCCGGW	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	136, 189
BseDI	CCNNGG	2 cut(s)	188, 322
BseGI	GGATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	54, 88
BshFI	GGCC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	2 cut(s)	18, 338
BsmFI	GGGAC	2 cut(s)	18, 338
BsnI	GGCC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	188, 322
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	136, 189
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	2 cut(s)	136, 189
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	134, 187
BstV1I	GCAGC	2 cut(s)	54, 88
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	48
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	166, 433, 493
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	134, 187
FaeI	CATG	3 cut(s)	169, 436, 496
FaqI	GGGAC	2 cut(s)	18, 338
FatI	CATG	3 cut(s)	165, 432, 492
Fnu4HI	GCNGC	2 cut(s)	43, 77
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	43, 77
FspBI	CTAG	2 cut(s)	429, 553
GluI	GCNGC	2 cut(s)	43, 77
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	169, 436, 496
HindIII	AAGCTT	2 cut(s)	140, 213
HinfI	GANTC	2 cut(s)	263, 351
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	287, 350
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	6 cut(s)	49, 115, 146, 255, 370, 530
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	135, 299
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	165, 287, 514
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	169, 436, 496
Kpn2I	TCCGGA	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	54, 88
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	429, 553
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	317, 338
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	6 cut(s)	58, 103, 161, 358, 371, 545
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	3 cut(s)	28, 53, 395
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	94, 299
MnlI	CCTC	4 cut(s)	4, 317, 366, 535
MroI	TCCGGA	1 cut(s)	529
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	136, 189
MvaI	CCWGG	2 cut(s)	136, 189
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	169, 436, 496
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	2 cut(s)	317, 338
NspI	RCATGY	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	44, 78
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	134, 187
PspGI	CCWGG	2 cut(s)	134, 187
PspN4I	GGNNCC	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	2 cut(s)	43, 77
Sau3AI	GATC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	136, 189
SetI	ASST	8 cut(s)	10, 47, 144, 217, 310, 393, 409, 546
SfaNI	GCATC	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	370
SlaI	CTCGAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	28, 53, 395
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	429, 553
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	134, 187
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	3 cut(s)	36, 57, 371
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	28, 53, 395
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	263
TseFI	GTSAC	2 cut(s)	317, 338
TseI	GCWGC	2 cut(s)	42, 76
Tsp45I	GTSAC	2 cut(s)	317, 338
XapI	RAATTY	2 cut(s)	53, 395
XceI	RCATGY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	2 cut(s)	429, 553
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.