Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Forward (+)

77613 .. 78170

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgggacgtgaggagatggctactaacaattatgtcgatagcagcttctggaaattcgacgccctcttccagccgcagcaacaccctgctcgtcattcgcacgatacattcttcttgaaaaccccttcaactaccaggaagcttccagaagattatgttgagtgcatgagtgtggtggttttgagtccgggggatatggttgtgattggaaaagctttactcccaaaaagtacttctctactgatcgtgtgttcccgaaacgaatcagtagatcgaacacatcttgcagagtttcaccaaatagaaggttgtatatgtgaccgaggccttactcttggtgacttgatgggaatccctgaagacttcttctcgaggctgggtatgtccgagctgaaattcaagccagcttataatccttatacagagcctagcctggagattttcggctatcacaagggttttgggaagtgggtggagattggaaaatctggcatgttcaggccagaaatgttgcatcctatgggggtagttccggaagatgttgaggttattgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

185

Amino Acids

20.9

Weight (kDa)

5.47

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	53, 395
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	118, 129, 400
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	134, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AluBI	AGCT	5 cut(s)	45, 142, 215, 391, 407
AluI	AGCT	5 cut(s)	45, 142, 215, 391, 407
AlwNI	CAGNNNCTG	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	2 cut(s)	325, 500
ApeKI	GCWGC	2 cut(s)	42, 76
ApoI	RAATTY	2 cut(s)	53, 395
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	287, 350
AvaI	CYCGRG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	54, 88
BccI	CCATC	2 cut(s)	10, 340
BciT130I	CCWGG	2 cut(s)	136, 434
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	429, 556
BisI	GCNGC	3 cut(s)	43, 74, 77
BlsI	GCNGC	3 cut(s)	44, 75, 78
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	3 cut(s)	136, 189, 434
BmeT110I	CYCGRG	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	8
BmrFI	CCNGG	3 cut(s)	136, 189, 434
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	188, 322
BsaWI	WCCGGW	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	136, 434
BseDI	CCNNGG	2 cut(s)	188, 322
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	54, 88
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	327, 502
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	188, 533
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	327, 502
BsoBI	CYCGRG	1 cut(s)	370
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	243, 271
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	327, 502
BspEI	TCCGGA	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	188, 322
BssMI	GATC	2 cut(s)	243, 271
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	136, 434
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	2 cut(s)	246, 274
BstMBI	GATC	2 cut(s)	243, 271
BstNI	CCWGG	2 cut(s)	136, 434
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	134, 187, 432
BstV1I	GCAGC	2 cut(s)	54, 88
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	327, 502
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	48
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	166, 493
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	245, 273
DpnII	GATC	2 cut(s)	243, 271
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	134, 432
FaeI	CATG	2 cut(s)	169, 496
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	165, 492
Fnu4HI	GCNGC	3 cut(s)	43, 74, 77
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	43, 74, 77
FspBI	CTAG	2 cut(s)	429, 556
GluI	GCNGC	3 cut(s)	43, 74, 77
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	327, 502
HapII	CCGG	2 cut(s)	188, 533
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	169, 496
HindIII	AAGCTT	2 cut(s)	140, 213
HinfI	GANTC	3 cut(s)	184, 263, 351
HpaII	CCGG	2 cut(s)	188, 533
HphI	GGTGA	2 cut(s)	287, 350
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	6 cut(s)	49, 115, 146, 255, 370, 533
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	135, 299
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	165, 287, 514
HpySE526I	ACGT	1 cut(s)	7
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	169, 496
Kpn2I	TCCGGA	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	243, 271
Lsp1109I	GCAGC	2 cut(s)	54, 88
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	2 cut(s)	429, 556
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	317, 338
MalI	GATC	2 cut(s)	245, 273
MboI	GATC	2 cut(s)	243, 271
MboII	GAAGA	6 cut(s)	58, 103, 161, 358, 371, 548
MluCI	AATT	3 cut(s)	28, 53, 395
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	4, 74, 317, 366, 538
MroI	TCCGGA	1 cut(s)	532
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	188, 533
MspR9I	CCNGG	3 cut(s)	136, 189, 434
MvaI	CCWGG	2 cut(s)	136, 434
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	243, 271
NlaIII	CATG	2 cut(s)	169, 496
NmuCI	GTSAC	2 cut(s)	317, 338
NspI	RCATGY	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	263, 351
PkrI	GCNGC	3 cut(s)	44, 75, 78
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	134, 432
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	2 cut(s)	134, 432
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	3 cut(s)	43, 74, 77
Sau3AI	GATC	2 cut(s)	243, 271
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	136, 189, 434
SetI	ASST	8 cut(s)	10, 47, 144, 217, 310, 393, 409, 549
SfaNI	GCATC	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	370
SlaI	CTCGAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	28, 53, 395
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	429, 556
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	134, 187, 432
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	4 cut(s)	36, 57, 274, 371
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	28, 53, 395
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	263, 351
TseFI	GTSAC	2 cut(s)	317, 338
TseI	GCWGC	2 cut(s)	42, 76
Tsp45I	GTSAC	2 cut(s)	317, 338
XapI	RAATTY	2 cut(s)	53, 395
XceI	RCATGY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	2 cut(s)	429, 556
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.