Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036338.1

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Reverse (-)

558 .. 1922

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgggaatccctgaagacttcttctcgaggctgggtatgtccgagctgaaattcaagccagcttataatccttatacagagcctagcctggagattttcggctatcacaagggttttgggaagtgggtggagattggaaaatctggcatgttcaggccagaaatgttgcatcctatgggggtagttccggaagatgttgagcagcttcctggtggattaggtgcccagaaacgggcaaagttccaaggctttgctttgacagcaagctcggaagctgctgagatcatctcaatcataaaccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

5.88

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	231, 232
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	87, 208
AluBI	AGCT	5 cut(s)	46, 62, 205, 267, 275
AluI	AGCT	5 cut(s)	46, 62, 205, 267, 275
Ama87I	CYCGRG	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	202, 275
ApoI	RAATTY	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	214, 262
BciT130I	CCWGG	2 cut(s)	89, 210
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	203, 276
BlsI	GCNGC	2 cut(s)	204, 277
Bme1390I	CCNGG	2 cut(s)	89, 210
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	89, 210
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 232
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	89, 210
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	231, 232
BseMII	CTCAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	214, 262
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	231, 232
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	89, 210
BstC8I	GCNNGC	2 cut(s)	60, 265
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	89, 210
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	87, 208
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	214, 262
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	60, 265
CviAII	CATG	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	87, 208
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	151
FaiI	YATR	6 cut(s)	38, 66, 75, 149, 176, 296
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	203, 276
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	203, 276
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	203, 276
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	43, 271
Hpy188III	TCNNGA	2 cut(s)	25, 188
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	282
Lsp1109I	GCAGC	2 cut(s)	214, 262
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	84
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	3 cut(s)	13, 26, 203
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	187
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	89, 210
MvaI	CCWGG	2 cut(s)	89, 210
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	204, 277
PsiI	TTATAA	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	87, 208
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	87, 208
PspN4I	GGNNCC	1 cut(s)	223
SatI	GCNGC	2 cut(s)	203, 276
Sau3AI	GATC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	89, 210
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	6 cut(s)	48, 64, 207, 223, 269, 277
SfaNI	GCATC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	87, 208
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	202, 275
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	25
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.