Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Forward (+)

32536457 .. 32537898

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCTAATCCAGCCGAATTACGGGATGTCTTGCTTTACTACTATCGCTATCGGTCCTCATTTATCCGCAAGACAAACAGAGAATGGGGATTGGAAGGAGTTGGAACTCAAAGAGTTCAACTTGAATGCTTAAGGAAGCTTCCAGAAGATTATATTGAGTGCATGAGTGTGGTGGTTTTGTGTCCAGGGGATATGGTTGTGATTGGAAAAGCTTTACTCCCAAAAATAGAAGGTTGTATATGTGACCGAGGCCTTACTCTTGGTGACTTGATGGGAGTCCTTGAAGACTTCTTCTCGAGGCTGGGTATGTCCGAGCTGAAATTCAAGCCAGCTTATAATCCTTATACAGAGCCTAGCATGGAGATTTTCGGCTATCACAAGGGTTTTGGGAAGTGGGTGGAGATTGGAAATTCTGGCATGTTCAGGCCAGAAATGTTGCATCCTATGGGGGTTCCGGAAGATGTTGAGGTTATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

159

Amino Acids

18.13

Weight (kDa)

5.28

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	75 - 159	4.2e-26	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	320, 409
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	119, 125, 284, 325
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	139, 212, 316, 332
AluI	AGCT	4 cut(s)	139, 212, 316, 332
Ama87I	CYCGRG	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	250, 425
ApoI	RAATTY	2 cut(s)	320, 409
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	291
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	186
BfaI	CTAG	2 cut(s)	354, 478
BfrI	CTTAAG	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	185, 247
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	185, 247
BseGI	GGATG	2 cut(s)	31, 439
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	2 cut(s)	252, 427
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	252, 427
BsoBI	CYCGRG	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	454
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	2 cut(s)	252, 427
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	185, 247
Bst2UI	CCWGG	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	31, 439
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	252, 427
BtsCI	GGATG	2 cut(s)	31, 439
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	3 cut(s)	163, 358, 418
Eco147I	AGGCCT	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	3 cut(s)	166, 361, 421
FatI	CATG	3 cut(s)	162, 357, 417
FokI	GGATG	2 cut(s)	38, 426
FspBI	CTAG	2 cut(s)	354, 478
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	252, 427
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	3 cut(s)	166, 361, 421
HindIII	AAGCTT	2 cut(s)	137, 210
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	143, 295, 455
HpyAV	CCTTC	2 cut(s)	89, 224
HpyCH4V	TGCA	2 cut(s)	162, 439
Hsp92II	CATG	3 cut(s)	166, 361, 421
Kpn2I	TCCGGA	1 cut(s)	454
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	2 cut(s)	354, 478
MaeIII	GTNAC	2 cut(s)	242, 263
MboII	GAAGA	4 cut(s)	158, 283, 296, 470
MluCI	AATT	3 cut(s)	17, 320, 409
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	67, 242, 291, 460
MroI	TCCGGA	1 cut(s)	454
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	186
NlaIII	CATG	3 cut(s)	166, 361, 421
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	242, 263
NspI	RCATGY	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	252
PctI	GAATGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	6 cut(s)	141, 214, 235, 318, 334, 471
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	130, 295
SmoI	CTYRAG	2 cut(s)	130, 295
Sse9I	AATT	3 cut(s)	17, 320, 409
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	354, 478
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	296
TaqII	GACCGA	2 cut(s)	42, 261
TasI	AATT	3 cut(s)	17, 320, 409
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	242, 263
Tsp45I	GTSAC	2 cut(s)	242, 263
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	2 cut(s)	320, 409
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	295
XspI	CTAG	2 cut(s)	354, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.