Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Reverse (-)

37935898 .. 37936440

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTACTAACAATTATGTCGATAGCAGCTTCTGGAAATTCGACGCACTCTTCCAGCCGCAGCAACACCCTGCTCGTCATTCGCACGATACATTCTTCTTGAAAACCCCTTCAACTACCAGGAAGCTTCCAGAAGATTATGTTGAGTGCATGAGTGTGGTGGTTTTGAGTCCAGGGGATATGGTTGTGATCGGAAAAGCTTTACTCCCAAAAAGTACTTCTCTACTGATCGTGTGTTCCCGAAACGAATCAGTAGATCGAACACATCTTGCAGAGTTTCACCAAATAGAAGGTTGTATATGTGACCGAGGCCTTACTCTTGGTGACTTGATGGGAATCCCTGAAGACTTCTTCTCGAGGCTGGGTATGTCCGAGCTGAAATTCAAGCCAGCTTATAATCCTTATACAGAGCCTAGCATGGAGATTTTCGGCTATCACAAGGGTTTTGGGAAGTGGGTGGAGATTGGAAAATCTGGCATGTTCAGGCCAGAAATGTTGCATCCTATGGGGGTAGTTCCGGAAGATGTTGAGGTTATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

5.61

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	3 - 180	4e-45	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	38, 380
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	103, 114, 385
AjnI	CCWGG	2 cut(s)	119, 172
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	5 cut(s)	30, 127, 200, 376, 392
AluI	AGCT	5 cut(s)	30, 127, 200, 376, 392
AlwNI	CAGNNNCTG	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	355
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	2 cut(s)	310, 485
ApeKI	GCWGC	2 cut(s)	27, 61
ApoI	RAATTY	2 cut(s)	38, 380
AsuHPI	GGTGA	2 cut(s)	272, 335
AvaI	CYCGRG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	39, 73
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	121, 174
BfaI	CTAG	2 cut(s)	414, 541
BisI	GCNGC	3 cut(s)	28, 59, 62
BlsI	GCNGC	3 cut(s)	29, 60, 63
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	121, 174
BmeT110I	CYCGRG	1 cut(s)	355
BmrFI	CCNGG	2 cut(s)	121, 174
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	173, 307
BsaWI	WCCGGW	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	121, 174
BseDI	CCNNGG	2 cut(s)	173, 307
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	39, 73
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	312, 487
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	518
BsnI	GGCC	2 cut(s)	312, 487
BsoBI	CYCGRG	1 cut(s)	355
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	189, 228, 256
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	312, 487
BspEI	TCCGGA	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	173, 307
BssMI	GATC	3 cut(s)	189, 228, 256
Bst2UI	CCWGG	2 cut(s)	121, 174
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	192, 231, 259
BstMBI	GATC	3 cut(s)	189, 228, 256
BstNI	CCWGG	2 cut(s)	121, 174
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	119, 172
BstV1I	GCAGC	2 cut(s)	39, 73
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	312, 487
BtsCI	GGATG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	33
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	151, 418, 478
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	3 cut(s)	191, 230, 258
DpnII	GATC	3 cut(s)	189, 228, 256
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	119, 172
FaeI	CATG	3 cut(s)	154, 421, 481
FatI	CATG	3 cut(s)	150, 417, 477
Fnu4HI	GCNGC	3 cut(s)	28, 59, 62
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	3 cut(s)	28, 59, 62
FspBI	CTAG	2 cut(s)	414, 541
GluI	GCNGC	3 cut(s)	28, 59, 62
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	312, 487
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	154, 421, 481
HindIII	AAGCTT	2 cut(s)	125, 198
HinfI	GANTC	3 cut(s)	169, 248, 336
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	2 cut(s)	272, 335
Hpy188I	TCNGA	2 cut(s)	194, 373
Hpy188III	TCNNGA	6 cut(s)	34, 100, 131, 240, 355, 518
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	120, 284
HpyCH4V	TGCA	3 cut(s)	150, 272, 499
Hsp92II	CATG	3 cut(s)	154, 421, 481
Kpn2I	TCCGGA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	189, 228, 256
Lsp1109I	GCAGC	2 cut(s)	39, 73
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	414, 541
MaeIII	GTNAC	2 cut(s)	302, 323
MalI	GATC	3 cut(s)	191, 230, 258
MboI	GATC	3 cut(s)	189, 228, 256
MboII	GAAGA	6 cut(s)	43, 88, 146, 343, 356, 533
MluCI	AATT	3 cut(s)	13, 38, 380
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	3 cut(s)	302, 351, 523
MroI	TCCGGA	1 cut(s)	517
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	121, 174
MvaI	CCWGG	2 cut(s)	121, 174
NdeII	GATC	3 cut(s)	189, 228, 256
NlaIII	CATG	3 cut(s)	154, 421, 481
NmuCI	GTSAC	2 cut(s)	302, 323
NspI	RCATGY	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	248, 336
PkrI	GCNGC	3 cut(s)	29, 60, 63
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	119, 172
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	119, 172
PstNI	CAGNNNCTG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	155
SatI	GCNGC	3 cut(s)	28, 59, 62
Sau3AI	GATC	3 cut(s)	189, 228, 256
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	121, 174
SetI	ASST	7 cut(s)	32, 129, 202, 295, 378, 394, 534
SfaNI	GCATC	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	355
SlaI	CTCGAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	13, 38, 380
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	414, 541
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	119, 172
TaqI	TCGA	4 cut(s)	21, 42, 259, 356
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	13, 38, 380
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	248, 336
TseFI	GTSAC	2 cut(s)	302, 323
TseI	GCWGC	2 cut(s)	27, 61
Tsp45I	GTSAC	2 cut(s)	302, 323
XapI	RAATTY	2 cut(s)	38, 380
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	355
XspI	CTAG	2 cut(s)	414, 541
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.