Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027686.1

Orthogroup ID

OG0019444

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 295

Gene Structure 295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atcagtagatcgaacacatcttgcagagtttcaccaaatagaaggttgtatatgtgaccgaggccttactcttggtgactttatgggagtccctgaagacttcttctcgaggctgggtatgtccgagctgaaattcaagccagcttataatccttatacagagcctagcatggagattttcggctatcacaagggtttttggaagtgggtggagattggaaaatctggcatgttcaggccagaaatgttgcatcctatgggggtagttccggaagatgttgaggttattgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

97

Amino Acids

11.11

Weight (kDa)

5.06

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218631
rosa_multiflora	Rmu_sc0001301.1_g000020 Rmu_sc0027686.1_g000001 Rmu_sc0036338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240720
rosa_samantha	Rh7AG320000 Rh7CG337000 Rh7DG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	148
AccIII	TCCGGA	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	2 cut(s)	128, 144
AluI	AGCT	2 cut(s)	128, 144
Ama87I	CYCGRG	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	2 cut(s)	62, 237
ApoI	RAATTY	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	24, 87
AvaI	CYCGRG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	166, 293
BmeT110I	CYCGRG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	64, 239
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	64, 239
BsoBI	CYCGRG	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	64, 239
BspEI	TCCGGA	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	64, 239
BtsCI	GGATG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	170, 230
CviJI	RGCY	8 cut(s)	64, 113, 128, 140, 144, 164, 184, 239
CviKI_1	RGCY	8 cut(s)	64, 113, 128, 140, 144, 164, 184, 239
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	107
FaeI	CATG	2 cut(s)	173, 233
FaiI	YATR	9 cut(s)	51, 53, 84, 120, 148, 157, 171, 231, 258
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	2 cut(s)	169, 229
FokI	GGATG	1 cut(s)	238
FspBI	CTAG	2 cut(s)	166, 293
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	64, 239
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	173, 233
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	24, 87
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	107, 270
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	24, 251
Hsp92II	CATG	2 cut(s)	173, 233
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	8
LpnPI	CCDG	7 cut(s)	99, 106, 154, 211, 221, 253, 283
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	2 cut(s)	166, 293
MaeIII	GTNAC	2 cut(s)	54, 75
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	3 cut(s)	95, 108, 285
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	54, 103, 275
MroI	TCCGGA	1 cut(s)	269
MspI	CCGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	2 cut(s)	173, 233
NmuCI	GTSAC	2 cut(s)	54, 75
NspI	RCATGY	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	64
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	97
SetI	ASST	4 cut(s)	47, 130, 146, 286
SfaNI	GCATC	1 cut(s)	260
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	132
SseBI	AGGCCT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	166, 293
StuI	AGGCCT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	11, 108
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	54, 75
Tsp45I	GTSAC	2 cut(s)	54, 75
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	2 cut(s)	166, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.