Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019971

Physical Location & Seq

Genomic Coordinates Reverse (-)

47302794 .. 47305612

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCATTAAAAATAACAAAAATTACAACTCATGCCATTCCCCATATATATTATTGCAACTCAGGTACTATATTCAAAGCCGTTCCGGGAGCTTTTGCTTTCAAGGCCAAGAAATGGCCCGGCTCGCCTCACCAGATTCCCAAGCTCTACGTTAGCGCCAGTAACATCGAAGCTTGCTACACTCCGTCGTACACAATTTTTGTGGCGCGTTTGCTTCAACCGCTGATGATCAAAAGCTGTCCGATGATCCTTCCTCTCCATCTCTTGTCCCCCAACGACGCTCGCCACCACCGAGGAGCCTTCGACGGTCGACGTCACCAGAGATCGGAGCCAAACACACACATGAGACTCCAAAATGATCTCCTTACCAACCGGTACTACACCTCTTCAAGGCTGCCGTCAAGATCACCGACTCCGATCCGCAAAACGACGGACGATGCGACGCCGCAGCACTCCGTGGCTTATGTTTCTCGATCTCCGGTGTCGCGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

10.26

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224931
rosa_samantha	Rh2BG480000 Rh2CG136200 Rh3AG072200 Rh3CG073400 Rh5CG435400 Rh6CG268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	2 cut(s)	208, 487
AciI	CCGC	4 cut(s)	221, 421, 446, 487
AclWI	GGATC	2 cut(s)	241, 412
AcyI	GRCGYC	2 cut(s)	313, 443
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	67, 191, 377
AfiI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	76, 103, 218, 390
AluBI	AGCT	4 cut(s)	92, 145, 173, 237
AluI	AGCT	4 cut(s)	92, 145, 173, 237
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	241, 412
AoxI	GGCC	2 cut(s)	105, 116
ApeKI	GCWGC	2 cut(s)	394, 448
AsiGI	ACCGGT	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	158, 208
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	87, 120
AsuHPI	GGTGA	3 cut(s)	122, 308, 399
BbvI	GCAGC	2 cut(s)	381, 460
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	2 cut(s)	65, 382
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	87, 120
BcoDI	GTCTC	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	3 cut(s)	395, 446, 449
BlsI	GCNGC	3 cut(s)	396, 447, 450
Bme1390I	CCNGG	2 cut(s)	87, 120
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	298, 330
BmrFI	CCNGG	2 cut(s)	87, 120
BmsI	GCATC	1 cut(s)	427
BpuMI	CCSGG	2 cut(s)	87, 120
BsaHI	GRCGYC	2 cut(s)	313, 443
BsaJI	CCNNGG	2 cut(s)	292, 456
BsaWI	WCCGGW	2 cut(s)	372, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 325, 390
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	292, 456
BseLI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	381, 460
Bsh1236I	CGCG	2 cut(s)	208, 487
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	107, 118
BshTI	ACCGGT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	86, 120, 373, 479
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	107, 118
Bsp143I	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BspACI	CCGC	4 cut(s)	221, 421, 446, 487
BspANI	GGCC	2 cut(s)	107, 118
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	208, 487
BspLI	GGNNCC	2 cut(s)	298, 330
BspPI	GGATC	2 cut(s)	241, 412
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	292, 456
BssMI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BssNI	GRCGYC	2 cut(s)	313, 443
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	313, 443
BstC8I	GCNNGC	3 cut(s)	125, 175, 283
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstFNI	CGCG	2 cut(s)	208, 487
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 208
BstKTI	GATC	7 cut(s)	231, 249, 326, 361, 407, 420, 476
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
BstSCI	CCNGG	2 cut(s)	85, 118
BstUI	CGCG	2 cut(s)	208, 487
BstV1I	GCAGC	2 cut(s)	381, 460
BsuRI	GGCC	2 cut(s)	107, 118
BtgI	CCRYGG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	125, 175, 283
CfoI	GCGC	2 cut(s)	158, 208
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	2 cut(s)	287, 451
Csp6I	GTAC	3 cut(s)	66, 190, 376
CspAI	ACCGGT	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	2 cut(s)	32, 343
CviQI	GTAC	3 cut(s)	66, 190, 376
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	7 cut(s)	230, 248, 325, 360, 406, 419, 475
DpnII	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
DraIII	CACNNNGTG	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	35, 346
FaiI	YATR	7 cut(s)	33, 45, 47, 49, 71, 344, 465
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	31, 342
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	395, 446, 449
Fsp4HI	GCNGC	3 cut(s)	395, 446, 449
GlaI	GCGC	2 cut(s)	157, 207
GluI	GCNGC	3 cut(s)	395, 446, 449
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	107, 118
HapII	CCGG	4 cut(s)	86, 120, 373, 479
HgaI	GACGC	2 cut(s)	287, 451
HhaI	GCGC	2 cut(s)	158, 208
Hin1I	GRCGYC	2 cut(s)	313, 443
Hin1II	CATG	2 cut(s)	35, 346
Hin6I	GCGC	2 cut(s)	156, 206
HinP1I	GCGC	2 cut(s)	156, 206
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	136, 348, 412
HpaII	CCGG	4 cut(s)	86, 120, 373, 479
HphI	GGTGA	3 cut(s)	122, 308, 399
Hpy166II	GTNNAC	2 cut(s)	192, 311
Hpy188I	TCNGA	3 cut(s)	243, 328, 417
Hpy188III	TCNNGA	2 cut(s)	402, 471
Hpy8I	GTNNAC	2 cut(s)	192, 311
Hpy99I	CGWCG	6 cut(s)	190, 281, 308, 315, 433, 445
HpyAV	CCTTC	2 cut(s)	260, 310
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	150, 313
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	2 cut(s)	150, 313
Hsp92I	GRCGYC	2 cut(s)	313, 443
Hsp92II	CATG	2 cut(s)	35, 346
HspAI	GCGC	2 cut(s)	156, 206
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
LmnI	GCTCC	3 cut(s)	89, 296, 328
LpnPI	CCDG	7 cut(s)	48, 99, 133, 146, 172, 332, 386
Lsp1109I	GCAGC	2 cut(s)	381, 460
LweI	GCATC	1 cut(s)	427
MaeII	ACGT	2 cut(s)	150, 313
MaeIII	GTNAC	2 cut(s)	161, 314
MalI	GATC	7 cut(s)	230, 248, 325, 360, 406, 419, 475
MboI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
MboII	GAAGA	1 cut(s)	378
MluCI	AATT	2 cut(s)	21, 195
MlyI	GAGTC	2 cut(s)	342, 406
MnlI	CCTC	4 cut(s)	138, 264, 287, 394
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	4 cut(s)	86, 120, 373, 479
MspR9I	CCNGG	2 cut(s)	87, 120
MvnI	CGCG	2 cut(s)	208, 487
MwoI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
NciI	CCSGG	2 cut(s)	87, 120
NdeII	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
NlaIII	CATG	2 cut(s)	35, 346
NlaIV	GGNNCC	2 cut(s)	298, 330
NmuCI	GTSAC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	289, 437
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	396, 447, 450
PleI	GAGTC	2 cut(s)	342, 406
PpsI	GAGTC	2 cut(s)	342, 406
PspN4I	GGNNCC	2 cut(s)	298, 330
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	3 cut(s)	67, 191, 377
RsaNI	GTAC	3 cut(s)	66, 190, 376
RseI	CAYNNNNRTG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	395, 446, 449
Sau3AI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	342, 406
ScrFI	CCNGG	2 cut(s)	87, 120
SetI	ASST	8 cut(s)	67, 94, 147, 153, 175, 239, 316, 386
SfaNI	GCATC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	21, 195
SsiI	CCGC	4 cut(s)	221, 421, 446, 487
StyD4I	CCNGG	2 cut(s)	85, 118
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	153, 316
TaqI	TCGA	4 cut(s)	168, 303, 310, 472
TasI	AATT	2 cut(s)	21, 195
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	394, 448
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	3 cut(s)	174, 445, 446
Van91I	CCANNNNNTGG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	310
ZraI	GACGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.