Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019971

Physical Location & Seq

Genomic Coordinates Reverse (-)

47302794 .. 47305612

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCATTAAAAATAACAAAAATTACAACTCATGCCATTCCCCATATATATTATTGCAACTCAGGTACTATATTCAAAGCCGTTCCGGGAGCTTTTGCTTTCAAGGCCAAGAAATGGCCCGGCTCGCCTCACCAGATTCCCAAGCTCTACGTTAGCGCCAGTAACATCGAAGCTTGCTACACTCCGTCGTACACAATTTTTGTGGCGCGTTTGCTTCAACCGCTGATGATCAAAAGCTGTCCGATGATCCTTCCTCTCCATCTCTTGTCCCCCAACGACGCTCGCCACCACCGAGGAGCCTTCGACGGTCGACGTCACCAGAGATCGGAGCCAAACACACACATGAGACTCCAAAATGATCTCCTTACCAACCGGTACTACACCTCTTCAAGGCTGCCGTCAAGATCACCGACTCCGATCCGCAAAACGACGGACGATGCGACGCCGCAGCACTCCGTGGCTTATGTTTCTCGATCTCCGGTGTCGCGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

10.26

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224931
rosa_samantha	Rh2BG480000 Rh2CG136200 Rh3AG072200 Rh3CG073400 Rh5CG435400 Rh6CG268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	2 cut(s)	208, 487
AciI	CCGC	4 cut(s)	221, 421, 446, 487
AclWI	GGATC	2 cut(s)	241, 412
AcyI	GRCGYC	2 cut(s)	313, 443
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	67, 191, 377
AfiI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	76, 103, 218, 390
AluBI	AGCT	4 cut(s)	92, 145, 173, 237
AluI	AGCT	4 cut(s)	92, 145, 173, 237
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	241, 412
AoxI	GGCC	2 cut(s)	105, 116
ApeKI	GCWGC	2 cut(s)	394, 448
AsiGI	ACCGGT	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	158, 208
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	87, 120
AsuHPI	GGTGA	3 cut(s)	122, 308, 399
BbvI	GCAGC	2 cut(s)	381, 460
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	2 cut(s)	65, 382
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	87, 120
BcoDI	GTCTC	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	3 cut(s)	395, 446, 449
BlsI	GCNGC	3 cut(s)	396, 447, 450
Bme1390I	CCNGG	2 cut(s)	87, 120
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	298, 330
BmrFI	CCNGG	2 cut(s)	87, 120
BmsI	GCATC	1 cut(s)	427
BpuMI	CCSGG	2 cut(s)	87, 120
BsaHI	GRCGYC	2 cut(s)	313, 443
BsaJI	CCNNGG	2 cut(s)	292, 456
BsaWI	WCCGGW	2 cut(s)	372, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 325, 390
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	292, 456
BseLI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	381, 460
Bsh1236I	CGCG	2 cut(s)	208, 487
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	107, 118
BshTI	ACCGGT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	86, 120, 373, 479
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	114, 325, 390
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	107, 118
Bsp143I	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BspACI	CCGC	4 cut(s)	221, 421, 446, 487
BspANI	GGCC	2 cut(s)	107, 118
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	208, 487
BspLI	GGNNCC	2 cut(s)	298, 330
BspPI	GGATC	2 cut(s)	241, 412
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	292, 456
BssMI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BssNI	GRCGYC	2 cut(s)	313, 443
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	313, 443
BstC8I	GCNNGC	3 cut(s)	125, 175, 283
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstFNI	CGCG	2 cut(s)	208, 487
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	158, 208
BstKTI	GATC	7 cut(s)	231, 249, 326, 361, 407, 420, 476
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
BstSCI	CCNGG	2 cut(s)	85, 118
BstUI	CGCG	2 cut(s)	208, 487
BstV1I	GCAGC	2 cut(s)	381, 460
BsuRI	GGCC	2 cut(s)	107, 118
BtgI	CCRYGG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	125, 175, 283
CfoI	GCGC	2 cut(s)	158, 208
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	2 cut(s)	287, 451
Csp6I	GTAC	3 cut(s)	66, 190, 376
CspAI	ACCGGT	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	2 cut(s)	32, 343
CviQI	GTAC	3 cut(s)	66, 190, 376
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	7 cut(s)	230, 248, 325, 360, 406, 419, 475
DpnII	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
DraIII	CACNNNGTG	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	35, 346
FaiI	YATR	7 cut(s)	33, 45, 47, 49, 71, 344, 465
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	31, 342
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	395, 446, 449
Fsp4HI	GCNGC	3 cut(s)	395, 446, 449
GlaI	GCGC	2 cut(s)	157, 207
GluI	GCNGC	3 cut(s)	395, 446, 449
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	107, 118
HapII	CCGG	4 cut(s)	86, 120, 373, 479
HgaI	GACGC	2 cut(s)	287, 451
HhaI	GCGC	2 cut(s)	158, 208
Hin1I	GRCGYC	2 cut(s)	313, 443
Hin1II	CATG	2 cut(s)	35, 346
Hin6I	GCGC	2 cut(s)	156, 206
HinP1I	GCGC	2 cut(s)	156, 206
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	136, 348, 412
HpaII	CCGG	4 cut(s)	86, 120, 373, 479
HphI	GGTGA	3 cut(s)	122, 308, 399
Hpy166II	GTNNAC	2 cut(s)	192, 311
Hpy188I	TCNGA	3 cut(s)	243, 328, 417
Hpy188III	TCNNGA	2 cut(s)	402, 471
Hpy8I	GTNNAC	2 cut(s)	192, 311
Hpy99I	CGWCG	6 cut(s)	190, 281, 308, 315, 433, 445
HpyAV	CCTTC	2 cut(s)	260, 310
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	150, 313
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	2 cut(s)	150, 313
Hsp92I	GRCGYC	2 cut(s)	313, 443
Hsp92II	CATG	2 cut(s)	35, 346
HspAI	GCGC	2 cut(s)	156, 206
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
LmnI	GCTCC	3 cut(s)	89, 296, 328
LpnPI	CCDG	7 cut(s)	48, 99, 133, 146, 172, 332, 386
Lsp1109I	GCAGC	2 cut(s)	381, 460
LweI	GCATC	1 cut(s)	427
MaeII	ACGT	2 cut(s)	150, 313
MaeIII	GTNAC	2 cut(s)	161, 314
MalI	GATC	7 cut(s)	230, 248, 325, 360, 406, 419, 475
MboI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
MboII	GAAGA	1 cut(s)	378
MluCI	AATT	2 cut(s)	21, 195
MlyI	GAGTC	2 cut(s)	342, 406
MnlI	CCTC	4 cut(s)	138, 264, 287, 394
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	4 cut(s)	86, 120, 373, 479
MspR9I	CCNGG	2 cut(s)	87, 120
MvnI	CGCG	2 cut(s)	208, 487
MwoI	GCNNNNNNNGC	3 cut(s)	104, 124, 220
NciI	CCSGG	2 cut(s)	87, 120
NdeII	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
NlaIII	CATG	2 cut(s)	35, 346
NlaIV	GGNNCC	2 cut(s)	298, 330
NmuCI	GTSAC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	289, 437
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	396, 447, 450
PleI	GAGTC	2 cut(s)	342, 406
PpsI	GAGTC	2 cut(s)	342, 406
PspN4I	GGNNCC	2 cut(s)	298, 330
PspPI	GGNCC	1 cut(s)	117
RsaI	GTAC	3 cut(s)	67, 191, 377
RsaNI	GTAC	3 cut(s)	66, 190, 376
RseI	CAYNNNNRTG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	395, 446, 449
Sau3AI	GATC	7 cut(s)	228, 246, 323, 358, 404, 417, 473
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	342, 406
ScrFI	CCNGG	2 cut(s)	87, 120
SetI	ASST	8 cut(s)	67, 94, 147, 153, 175, 239, 316, 386
SfaNI	GCATC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	21, 195
SsiI	CCGC	4 cut(s)	221, 421, 446, 487
StyD4I	CCNGG	2 cut(s)	85, 118
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	153, 316
TaqI	TCGA	4 cut(s)	168, 303, 310, 472
TasI	AATT	2 cut(s)	21, 195
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	394, 448
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	3 cut(s)	174, 445, 446
Van91I	CCANNNNNTGG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	310
ZraI	GACGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.