Rh2BG480000

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
67965657 .. 67974565
8909 bp
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UTR
Exon/CDS
Intron
Rh2BG480000.1

Sequence Viewer

Length: 198 bp
ATGATCGATCATAGTGATCAATCAGTGACAACCAATACTAGTGTAGTGACTCATGTGTATTCAAATCTTCAGGATAATAGTCCACATATAGTCAATACTGCATGGGCTATGTTGGCCCTGCTTGGTGCTGGGCAGCAAGCATCCGAATATGATCGTTACCGGTTTAATGAAAACAGGAATGAGATGAATGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.38

Weight (kDa)

5.33

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019971)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AgeI ACCGGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 63
AhlI ACTAGT 1 cut(s) 38
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 133
AsiGI ACCGGT 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 145
BclI TGATCA 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 6
BsiSI CCGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 3, 7, 16, 151
BspANI GGCC 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 4 cut(s) 3, 7, 16, 151
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 4 cut(s) 6, 10, 19, 154
BstMBI GATC 4 cut(s) 3, 7, 16, 151
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 6
CspAI ACCGGT 1 cut(s) 159
CviAII CATG 2 cut(s) 53, 102
CviJI RGCY 2 cut(s) 107, 116
CviKI_1 RGCY 2 cut(s) 107, 116
DpnI GATC 4 cut(s) 5, 9, 18, 153
DpnII GATC 4 cut(s) 3, 7, 16, 151
Eco57I CTGAAG 1 cut(s) 53
FaeI CATG 2 cut(s) 56, 105
FaiI YATR 7 cut(s) 12, 54, 87, 89, 103, 110, 150
FatI CATG 2 cut(s) 52, 101
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 160
Hin1II CATG 2 cut(s) 56, 105
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 56, 105
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 3, 7, 16, 151
LpnPI CCDG 5 cut(s) 56, 114, 131, 160, 173
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 25, 46, 155
MalI GATC 4 cut(s) 5, 9, 18, 153
MboI GATC 4 cut(s) 3, 7, 16, 151
MboII GAAGA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 43
MseI TTAA 1 cut(s) 165
MspI CCGG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 4 cut(s) 3, 7, 16, 151
NlaIII CATG 2 cut(s) 56, 105
NmuCI GTSAC 2 cut(s) 25, 46
PinAI ACCGGT 1 cut(s) 159
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 4 cut(s) 3, 7, 16, 151
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 38
SspMI CTAG 1 cut(s) 39
TaqI TCGA 1 cut(s) 6
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 25, 46
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 25, 46
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 30
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.