Rh6CG268500

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
44295201 .. 44301455
6255 bp
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UTR
Exon/CDS
Intron
Rh6CG268500.1

Sequence Viewer

Length: 255 bp
ATGGTGTATTCAAATCTTCAGGATAATAGGCCACATATAGTCAATACTGCATGGGCTATGTTGGCCCTGCTTGGTGCTGGGCAGGTTCTGGAACTTGGATTGGAAATCAGGTACTACACCTCTTCAAGGCCGCCGCCGAGATCACCGACTCTGATCCGCAAAACTACGGACGATGCGACGCCGCAGCGCTCCATCACTTATGTTTCTCGGTCTCTGATGTTGCGGTGGGAAAGTGACTGCGAGGATCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.62

Weight (kDa)

6.71

Isoelectric Point (pI)

73.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019971)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AciI CCGC 5 cut(s) 131, 134, 157, 182, 223
AclWI GGATC 2 cut(s) 148, 252
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 1 cut(s) 113
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 2 cut(s) 12, 126
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 2 cut(s) 148, 252
AlwNI CAGNNNCTG 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 3 cut(s) 29, 63, 128
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 135
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 4 cut(s) 131, 134, 182, 185
BlsI GCNGC 4 cut(s) 132, 135, 183, 186
BmgT120I GGNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 3 cut(s) 31, 65, 130
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 3 cut(s) 31, 65, 130
Bso31I GGTCTC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 140, 153, 244
BspACI CCGC 5 cut(s) 131, 134, 157, 182, 223
BspANI GGCC 3 cut(s) 31, 65, 130
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 2 cut(s) 148, 252
BspTNI GGTCTC 1 cut(s) 216
BssMI GATC 3 cut(s) 140, 153, 244
BssNI GRCGYC 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 179
BstENI CCTNNNNNAGG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 143, 156, 247
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 3 cut(s) 140, 153, 244
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 3 cut(s) 31, 65, 130
BveI ACCTGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 31, 56, 65, 130
CviKI_1 RGCY 4 cut(s) 31, 56, 65, 130
CviQI GTAC 1 cut(s) 112
DpnI GATC 3 cut(s) 142, 155, 246
DpnII GATC 3 cut(s) 140, 153, 244
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 216
Eco47III AGCGCT 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 124
FaeI CATG 1 cut(s) 54
FaiI YATR 5 cut(s) 36, 38, 52, 59, 201
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 131, 134, 182, 185
Fsp4HI GCNGC 4 cut(s) 131, 134, 182, 185
GlaI GCGC 1 cut(s) 188
GluI GCNGC 4 cut(s) 131, 134, 182, 185
GsaI CCCAGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 3 cut(s) 31, 65, 130
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 1 cut(s) 148
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 153, 216
Hpy188III TCNNGA 2 cut(s) 20, 89
Hpy99I CGWCG 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 140, 153, 244
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 6 cut(s) 5, 63, 68, 74, 80, 94
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 233
MalI GATC 3 cut(s) 142, 155, 246
MboI GATC 3 cut(s) 140, 153, 244
MboII GAAGA 2 cut(s) 8, 114
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 130, 235
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 140, 153, 244
NlaIII CATG 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PkrI GCNGC 4 cut(s) 132, 135, 183, 186
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 4 cut(s) 131, 134, 182, 185
Sau3AI GATC 3 cut(s) 140, 153, 244
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 142
SetI ASST 3 cut(s) 87, 113, 122
SfaNI GCATC 1 cut(s) 163
SsiI CCGC 5 cut(s) 131, 134, 157, 182, 223
TaqII GACCGA 1 cut(s) 198
TauI GCSGC 3 cut(s) 133, 136, 184
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.