Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019971

Physical Location & Seq

Genomic Coordinates Forward (+)

12098758 .. 12099344

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCATTCATATATATTATTGCAACTCAGGTACTATATTCAAAGCCGTTCCGAGAGCTTTTGCTTTCAAGGCCAAGAAATGGCCCGGCTCGCCTCACCAGATTCCCAAGCTCTACGTTAGCGCCAGTAACATCGAAGCTTGCTACACTCCGTCGTACACAATTTTTTGTGGCGCGTTTGCTTCAACCGCCGATGATCAAAAGCTGTCCGATGATCCTTCCTCTCCATCTCTTGTCCCCCAACAACGCTCGCCACCACCGAGGAGCCTTCGACGGTCGATGTCACCAGAGATCGGAGCCAAACACACACATGAGACTCCAAAATGATCTCCTTACCAACCGGTACTGCACCTCTTCAAGGCTGCCGCCGAGATCACCGACTCCGATCCGTAAAACGACGGACGATGCGACGCCGCAGCGCTCCGTCGCTTATGTTTCTCGGTCTCCGGTGTTGCGGTGGGAAAGCAACTGCGAGGATCACATTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

163

Amino Acids

18.79

Weight (kDa)

11.17

Isoelectric Point (pI)

75.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224931
rosa_samantha	Rh2BG480000 Rh2CG136200 Rh3AG072200 Rh3CG073400 Rh5CG435400 Rh6CG268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	175
AciI	CCGC	4 cut(s)	188, 365, 413, 454
AclWI	GGATC	3 cut(s)	208, 379, 483
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	3 cut(s)	33, 157, 344
AfeI	AGCGCT	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	80, 292, 357
AgeI	ACCGGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	42, 69, 185, 357, 487
AluBI	AGCT	4 cut(s)	58, 111, 139, 204
AluI	AGCT	4 cut(s)	58, 111, 139, 204
Alw26I	GTCTC	2 cut(s)	307, 447
AlwI	GGATC	3 cut(s)	208, 379, 483
Aor51HI	AGCGCT	1 cut(s)	419
AoxI	GGCC	2 cut(s)	71, 82
ApeKI	GCWGC	2 cut(s)	361, 415
AsiGI	ACCGGT	1 cut(s)	339
AspLEI	GCGC	3 cut(s)	124, 175, 420
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	88, 275, 366
BbvI	GCAGC	2 cut(s)	348, 427
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	307, 447
BfoI	RGCGCY	2 cut(s)	125, 421
BisI	GCNGC	4 cut(s)	362, 365, 413, 416
BlsI	GCNGC	4 cut(s)	363, 366, 414, 417
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	265, 297
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	339, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 292, 357
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	80, 292, 357
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	348, 427
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	73, 84
BshTI	ACCGGT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	86, 340, 446
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	80, 292, 357
BsmAI	GTCTC	2 cut(s)	307, 447
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	73, 84
Bso31I	GGTCTC	1 cut(s)	447
Bsp143I	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
BspACI	CCGC	4 cut(s)	188, 365, 413, 454
BspANI	GGCC	2 cut(s)	73, 84
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	265, 297
BspPI	GGATC	3 cut(s)	208, 379, 483
BspTNI	GGTCTC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
BssNI	GRCGYC	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	91, 141, 250
BstDEI	CTNAG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	2 cut(s)	125, 421
BstHHI	GCGC	3 cut(s)	124, 175, 420
BstKTI	GATC	7 cut(s)	198, 216, 293, 328, 374, 387, 478
BstMAI	GTCTC	2 cut(s)	307, 447
BstMBI	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 90, 187
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	348, 427
BsuRI	GGCC	2 cut(s)	73, 84
Cac8I	GCNNGC	3 cut(s)	91, 141, 250
CfoI	GCGC	3 cut(s)	124, 175, 420
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	3 cut(s)	32, 156, 343
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	3 cut(s)	32, 156, 343
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	7 cut(s)	197, 215, 292, 327, 373, 386, 477
DpnII	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	447
Eco47III	AGCGCT	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	313
FaiI	YATR	6 cut(s)	11, 13, 15, 37, 311, 432
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	362, 365, 413, 416
Fsp4HI	GCNGC	4 cut(s)	362, 365, 413, 416
GlaI	GCGC	3 cut(s)	123, 174, 419
GluI	GCNGC	4 cut(s)	362, 365, 413, 416
HaeII	RGCGCY	2 cut(s)	125, 421
HaeIII	GGCC	2 cut(s)	73, 84
HapII	CCGG	3 cut(s)	86, 340, 446
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	3 cut(s)	124, 175, 420
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	3 cut(s)	122, 173, 418
HinP1I	GCGC	3 cut(s)	122, 173, 418
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	102, 315, 379
HpaII	CCGG	3 cut(s)	86, 340, 446
HphI	GGTGA	3 cut(s)	88, 275, 366
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	53, 210, 295, 384
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	5 cut(s)	156, 275, 400, 412, 428
HpyAV	CCTTC	2 cut(s)	227, 277
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	23, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 90, 187
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	3 cut(s)	122, 173, 418
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
LmnI	GCTCC	3 cut(s)	263, 295, 425
LpnPI	CCDG	7 cut(s)	14, 99, 112, 138, 299, 353, 459
Lsp1109I	GCAGC	2 cut(s)	348, 427
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	127, 281
MalI	GATC	7 cut(s)	197, 215, 292, 327, 373, 386, 477
MboI	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
MboII	GAAGA	1 cut(s)	345
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	309, 373
MnlI	CCTC	5 cut(s)	104, 231, 254, 361, 466
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	3 cut(s)	86, 340, 446
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	70, 90, 187
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	265, 297
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	2 cut(s)	256, 404
PfeI	GAWTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	339
PkrI	GCNGC	4 cut(s)	363, 366, 414, 417
PleI	GAGTC	2 cut(s)	309, 373
PpsI	GAGTC	2 cut(s)	309, 373
PspN4I	GGNNCC	2 cut(s)	265, 297
PspPI	GGNCC	1 cut(s)	83
RsaI	GTAC	3 cut(s)	33, 157, 344
RsaNI	GTAC	3 cut(s)	32, 156, 343
RseI	CAYNNNNRTG	1 cut(s)	308
SatI	GCNGC	4 cut(s)	362, 365, 413, 416
Sau3AI	GATC	7 cut(s)	195, 213, 290, 325, 371, 384, 475
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	309, 373
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	7 cut(s)	33, 60, 113, 119, 141, 206, 353
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	4 cut(s)	188, 365, 413, 454
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	3 cut(s)	134, 270, 277
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	161
TauI	GCSGC	2 cut(s)	367, 415
TfiI	GAWTC	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	361, 415
Tsp45I	GTSAC	1 cut(s)	281
TspGWI	ACGGA	4 cut(s)	140, 377, 412, 413
Van91I	CCANNNNNTGG	1 cut(s)	80
XagI	CCTNNNNNAGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.