Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019971

Physical Location & Seq

Genomic Coordinates Reverse (-)

5731330 .. 5731835

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCGGCTCGCCTCACCAGATTCCCAAGCTCTACGTTAGCGCCAGCAACATCGAAGCTTGCTACACTCCGTCGCACACAATTTTTGTGGCGCGTTTGCTTCAACCGCCGATGAACAAAAGTTGTCCAATGATCCTTCCTCTCCATCTCTTGTCCCCCAACGACGCTCGCCACCACCGAGGATCCTTCGACGGTCAACGTCACCAGAGATCGGAGCCAAACACACACATGAGACTCCAAAATGATCTCCTTACCAACCGGTACTACACCTCTTCAAGGCTGCCACCGAGATCACTGACTCCGATCCGCAAAACGACAGACGATGCGACGCCGCAGCGCTCCGTCGCTTATGTTTCTCGGTCTCCGGTGTTGCGGTGGGAAAGCAACTGCGAGGATCACATTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

136

Amino Acids

15.6

Weight (kDa)

9.77

Isoelectric Point (pI)

80.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224931
rosa_samantha	Rh2BG480000 Rh2CG136200 Rh3AG072200 Rh3CG073400 Rh5CG435400 Rh6CG268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	107, 307, 332, 373
AclWI	GGATC	5 cut(s)	127, 177, 190, 298, 402
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	263
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	211, 276
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	104, 276, 406
AluBI	AGCT	2 cut(s)	31, 59
AluI	AGCT	2 cut(s)	31, 59
Alw26I	GTCTC	2 cut(s)	226, 366
AlwI	GGATC	5 cut(s)	127, 177, 190, 298, 402
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	280, 334
AsiGI	ACCGGT	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	44, 94, 339
AsuHPI	GGTGA	2 cut(s)	8, 194
BamHI	GGATCC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	267, 346
BccI	CCATC	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	226, 366
BfoI	RGCGCY	2 cut(s)	45, 340
BisI	GCNGC	3 cut(s)	281, 332, 335
BlsI	GCNGC	3 cut(s)	282, 333, 336
BmiI	GGNNCC	2 cut(s)	184, 216
BmsI	GCATC	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	2 cut(s)	258, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 276
Bse118I	RCCGGY	2 cut(s)	5, 258
BseDI	CCNNGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	211, 276
BseXI	GCAGC	2 cut(s)	267, 346
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	6, 259, 365
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	211, 276
BsmAI	GTCTC	2 cut(s)	226, 366
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	366
Bsp143I	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
BspACI	CCGC	4 cut(s)	107, 307, 332, 373
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	184, 216
BspPI	GGATC	5 cut(s)	127, 177, 190, 298, 402
BspTNI	GGTCTC	1 cut(s)	366
BsrFI	RCCGGY	2 cut(s)	5, 258
BssAI	RCCGGY	2 cut(s)	5, 258
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
BssNI	GRCGYC	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	7, 11, 46, 61, 169
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	2 cut(s)	45, 340
BstHHI	GCGC	3 cut(s)	44, 94, 339
BstKTI	GATC	7 cut(s)	135, 185, 212, 247, 293, 306, 397
BstMAI	GTCTC	2 cut(s)	226, 366
BstMBI	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	267, 346
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	5 cut(s)	7, 11, 46, 61, 169
CfoI	GCGC	3 cut(s)	44, 94, 339
Cfr10I	RCCGGY	2 cut(s)	5, 258
CseI	GACGC	2 cut(s)	173, 337
Csp6I	GTAC	1 cut(s)	262
CspAI	ACCGGT	1 cut(s)	258
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	5, 9, 31, 59, 217, 280
CviKI_1	RGCY	6 cut(s)	5, 9, 31, 59, 217, 280
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	7 cut(s)	134, 184, 211, 246, 292, 305, 396
DpnII	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	366
Eco47III	AGCGCT	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 351
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	281, 332, 335
Fsp4HI	GCNGC	3 cut(s)	281, 332, 335
GlaI	GCGC	3 cut(s)	43, 93, 338
GluI	GCNGC	3 cut(s)	281, 332, 335
HaeII	RGCGCY	2 cut(s)	45, 340
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	6, 259, 365
HgaI	GACGC	2 cut(s)	173, 337
HhaI	GCGC	3 cut(s)	44, 94, 339
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	3 cut(s)	42, 92, 337
HinP1I	GCGC	3 cut(s)	42, 92, 337
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	3 cut(s)	22, 234, 298
HpaII	CCGG	3 cut(s)	6, 259, 365
HphI	GGTGA	2 cut(s)	8, 194
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	214, 303
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	5 cut(s)	76, 167, 194, 331, 347
HpyAV	CCTTC	2 cut(s)	146, 196
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	36, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	36, 199
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	3 cut(s)	42, 92, 337
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
LmnI	GCTCC	2 cut(s)	214, 344
LpnPI	CCDG	6 cut(s)	19, 32, 58, 218, 272, 378
Lsp1109I	GCAGC	2 cut(s)	267, 346
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	2 cut(s)	36, 199
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	7 cut(s)	134, 184, 211, 246, 292, 305, 396
MboI	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	2 cut(s)	228, 292
MnlI	CCTC	5 cut(s)	24, 150, 173, 280, 385
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	3 cut(s)	6, 259, 365
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	106
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	184, 216
NmuCI	GTSAC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	282, 333, 336
PleI	GAGTC	2 cut(s)	228, 292
PpsI	GAGTC	2 cut(s)	228, 292
PspN4I	GGNNCC	2 cut(s)	184, 216
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	3 cut(s)	281, 332, 335
Sau3AI	GATC	7 cut(s)	132, 182, 209, 244, 290, 303, 394
SchI	GAGTC	2 cut(s)	228, 292
SetI	ASST	5 cut(s)	33, 39, 61, 202, 272
SfaNI	GCATC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	107, 307, 332, 373
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	39, 202
TaqI	TCGA	2 cut(s)	54, 189
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	81
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	280, 334
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	2 cut(s)	60, 331
TspRI	CASTG	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.