Rh5CG435400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019971
Physical Location & Seq
Reverse (-)
60263148 .. 60263538
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG435400.1

Sequence Viewer

Length: 297 bp
ATGAGACTCCAAAATGATCTTCTTACCAACCGGTACTACACCTCTTCAAGGCCGCCGCCGAGATCACAGACTCCGATCCGCAAAACAACTGACGATGAGACGCCGCAGCGTTCCGTCGCTTCTGTTTCTCTGTCTCCGGTGCTGCGGTGGAAAGCGACTGTGAGGATCACATTTTCAAGTAATGGTGAGAGTGGGAAGAAGAAGGAAAAGACCAGGTCTTGGTTGAAGAAGAAGGAAAAGACCAGGTCTTGGTTGAAGAAGAAGGAAAAGGGAGTAGAGAGATTTATGGTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.57

Weight (kDa)

10.9

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019971)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0224931
rosa_samantha Rh2BG480000 Rh2CG136200 Rh3AG072200 Rh3CG073400 Rh5CG435400 Rh6CG268500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 219, 249
AciI CCGC 5 cut(s) 53, 56, 79, 104, 145
AclWI GGATC 2 cut(s) 70, 173
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 48, 219, 249
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 4 cut(s) 48, 177, 226, 256
AjnI CCWGG 2 cut(s) 212, 242
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 92, 138
AlwI GGATC 2 cut(s) 70, 173
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 106, 142
AsiGI ACCGGT 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 2 cut(s) 118, 129
BciT130I CCWGG 2 cut(s) 214, 244
BcoDI GTCTC 2 cut(s) 92, 138
BisI GCNGC 5 cut(s) 53, 56, 104, 107, 143
BlsI GCNGC 5 cut(s) 54, 57, 105, 108, 144
Bme1390I CCNGG 2 cut(s) 214, 244
BmrFI CCNGG 2 cut(s) 214, 244
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 30, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 219, 249
Bse118I RCCGGY 1 cut(s) 30
BseBI CCWGG 2 cut(s) 214, 244
BseLI CCNNNNNNNGG 3 cut(s) 48, 219, 249
BseXI GCAGC 2 cut(s) 118, 129
BshFI GGCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 30
BsiSI CCGG 2 cut(s) 31, 137
BslI CCNNNNNNNGG 3 cut(s) 48, 219, 249
BsmAI GTCTC 2 cut(s) 92, 138
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 4 cut(s) 16, 62, 75, 165
BspACI CCGC 5 cut(s) 53, 56, 79, 104, 145
BspANI GGCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 70, 173
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssMI GATC 4 cut(s) 16, 62, 75, 165
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 214, 244
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 101
BstENI CCTNNNNNAGG 1 cut(s) 46
BstKTI GATC 4 cut(s) 19, 65, 78, 168
BstMAI GTCTC 2 cut(s) 92, 138
BstMBI GATC 4 cut(s) 16, 62, 75, 165
BstNI CCWGG 2 cut(s) 214, 244
BstSCI CCNGG 2 cut(s) 212, 242
BstV1I GCAGC 2 cut(s) 118, 129
BsuRI GGCC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 30
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 2 cut(s) 212, 242
Csp6I GTAC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 30
CviJI RGCY 1 cut(s) 52
CviKI_1 RGCY 1 cut(s) 52
CviQI GTAC 1 cut(s) 34
DpnI GATC 4 cut(s) 18, 64, 77, 167
DpnII GATC 4 cut(s) 16, 62, 75, 165
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 212, 242
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 2 cut(s) 287, 292
Fnu4HI GCNGC 5 cut(s) 53, 56, 104, 107, 143
Fsp4HI GCNGC 5 cut(s) 53, 56, 104, 107, 143
GluI GCNGC 5 cut(s) 53, 56, 104, 107, 143
HaeIII GGCC 1 cut(s) 52
HapII CCGG 2 cut(s) 31, 137
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 101
HinfI GANTC 2 cut(s) 6, 70
HpaII CCGG 2 cut(s) 31, 137
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 196, 226, 256
HpyCH4III ACNGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 101
Kzo9I GATC 4 cut(s) 16, 62, 75, 165
LpnPI CCDG 6 cut(s) 44, 150, 199, 226, 229, 256
Lsp1109I GCAGC 2 cut(s) 118, 129
MabI ACCWGGT 2 cut(s) 212, 242
MalI GATC 4 cut(s) 18, 64, 77, 167
MboI GATC 4 cut(s) 16, 62, 75, 165
MboII GAAGA 8 cut(s) 11, 36, 208, 211, 238, 241, 268, 271
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 2 cut(s) 52, 156
MspI CCGG 2 cut(s) 31, 137
MspR9I CCNGG 2 cut(s) 214, 244
MvaI CCWGG 2 cut(s) 214, 244
NdeII GATC 4 cut(s) 16, 62, 75, 165
NmeAIII GCCGAG 1 cut(s) 84
PflFI GACNNNGTC 2 cut(s) 214, 244
PflMI CCANNNNNTGG 2 cut(s) 219, 249
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 5 cut(s) 54, 57, 105, 108, 144
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 212, 242
PspGI CCWGG 2 cut(s) 212, 242
PsyI GACNNNGTC 2 cut(s) 214, 244
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 5 cut(s) 53, 56, 104, 107, 143
Sau3AI GATC 4 cut(s) 16, 62, 75, 165
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 214, 244
SetI ASST 3 cut(s) 44, 218, 248
SexAI ACCWGGT 2 cut(s) 212, 242
SsiI CCGC 5 cut(s) 53, 56, 79, 104, 145
StyD4I CCNGG 2 cut(s) 212, 242
TaaI ACNGT 1 cut(s) 160
TauI GCSGC 3 cut(s) 55, 58, 106
TseI GCWGC 2 cut(s) 106, 142
TspGWI ACGGA 1 cut(s) 103
Tth111I GACNNNGTC 2 cut(s) 214, 244
Van91I CCANNNNNTGG 2 cut(s) 219, 249
XagI CCTNNNNNAGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.