RchiOBHm_Chr7g0240501

Domain of unknown function (DUF4750)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019621
Physical Location & Seq
Forward (+)
66479551 .. 66488379
8829 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGTCTCTTTCTACCTGGGACTATCTCACCCTTCTCCTTCTTCGCCCTCTCTTCGCAATCGCACTCGTCGTCTTGTTCATTGCTTCCGGTTGGTATTTGGCGTGGAAGCTGGTTTTGGTTCATGTTCCTCTTGTTCAAGAGATTTTCGGGTTGAAAAAGAAGCCCGTCAATCCCAAACCCGCAAATCGTGGTCGATTTTCCAAGTTTTACAGTACATGGGAAACCCAGAATTCAGCTTCTGAATGGATTTTGAGAAACGAAGGGAGAGCAAAGTTGGTAGATTCATTTGTGATTGAAGGGTACGGGAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4750

Protein Analysis

104

Amino Acids

11.9

Weight (kDa)

9.75

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4750 PF15938 6 - 58 3.2e-24 Domain of unknown function (DUF4750)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36380
fragaria_vesca FvH4_5g38460
malus_domestica MD15G1359700.v1.1
prunus_persica Prupe.1G507400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0240501
rosa_roxburghii Rroxscaffold_3G00219930
rosa_wichuraiana Rw7G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 2 cut(s) 214, 302
AgsI TTSAA 3 cut(s) 137, 154, 296
AjnI CCWGG 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 109, 236
AluI AGCT 2 cut(s) 109, 236
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 239
ApoI RAATTY 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 313
BspACI CCGC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 239
Csp6I GTAC 2 cut(s) 213, 301
CviAII CATG 3 cut(s) 122, 216, 312
CviJI RGCY 3 cut(s) 109, 163, 236
CviKI_1 RGCY 3 cut(s) 109, 163, 236
CviQI GTAC 2 cut(s) 213, 301
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 3 cut(s) 125, 219, 315
FaiI YATR 3 cut(s) 123, 217, 313
FaqI GGGAC 1 cut(s) 32
FatI CATG 3 cut(s) 121, 215, 311
FauI CCCGC 1 cut(s) 187
HapII CCGG 1 cut(s) 87
Hin1II CATG 3 cut(s) 125, 219, 315
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 41, 47, 254, 290
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 311
Hsp92II CATG 3 cut(s) 125, 219, 315
LpnPI CCDG 4 cut(s) 28, 95, 100, 239
MboII GAAGA 2 cut(s) 32, 43
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 57, 138
Mph1103I ATGCAT 1 cut(s) 313
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 16
NlaIII CATG 3 cut(s) 125, 219, 315
NsiI ATGCAT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 214, 302
RsaNI GTAC 2 cut(s) 213, 301
ScrFI CCNGG 1 cut(s) 16
SetI ASST 3 cut(s) 17, 111, 238
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 193
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 67, 110, 273
XapI RAATTY 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.