RchiOBHm_Chr6g0245711

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019120
Physical Location & Seq
Forward (+)
1476930 .. 1478997
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGGTCCAGTTCGTTTGCCTTCGTTGGTGCAAAATGTGAAGCAAATTTTGAGAGTTAAGTCTCACAACCATGAAGTTCCGAAAGGGCATGTTGCAGTTTATGTGGGAGAGCAAATTGAGAAGAGGAGGTATGTGGTGTCGGTATCTTACTTGAACCACCTTTCATTCAAAGACTTGCTTAAGCGAGCTGAAGATGAGTTTGGCTTCAATCATCCGATGGGCGGTCTCACGATTCTGTGCAGAGAAGAGACCTTTTTTGATCTTATTGCTCCTAAGTTGGGAGCCAGAAGACTAACCGGTAGAACACTCTTTGCTAGTTGGTGGTTGTTAGAATACATGTATTTTGTAGAGATTCATAATATCATTTCGGGACATACTCTTTATGGTTATTGTAATCAGGGGTTTAGACTCAATGTCCCCCCCTGTATTAGACAGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

147

Amino Acids

17.11

Weight (kDa)

9.4

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 89 2.6e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34790 AT4G34800 AT4G34810
fragaria_vesca FvH4_2g02280
malus_domestica MD05G1113700.v1.1
prunus_persica Prupe.8G158200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245711 RchiOBHm_Chr6g0245761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 221, 278
AflII CTTAAG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 336
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 154, 169, 208
AhdI GACNNNNNGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 3 cut(s) 66, 230, 242
ApoI RAATTY 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 295
BccI CCATC 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 66, 230, 242
BfaI CTAG 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 5
BmeRI GACNNNNNGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 283
BpiI GAAGAC 1 cut(s) 295
BsaI GGTCTC 2 cut(s) 230, 242
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 278
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 221, 278
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 296
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 384, 401
BslI CCNNNNNNNGG 2 cut(s) 221, 278
BsmAI GTCTC 3 cut(s) 66, 230, 242
BsmFI GGGAC 2 cut(s) 384, 401
Bso31I GGTCTC 2 cut(s) 230, 242
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 6, 283
BspTI CTTAAG 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 230, 242
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 116, 240
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 3 cut(s) 66, 230, 242
BstMBI GATC 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 92, 340
BstV2I GAAGAC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 5
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 3 cut(s) 71, 89, 337
CviJI RGCY 3 cut(s) 188, 204, 284
CviKI_1 RGCY 3 cut(s) 188, 204, 284
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 413
Eam1104I CTCTTC 2 cut(s) 116, 240
Eam1105I GACNNNNNGTC 1 cut(s) 413
EarI CTCTTC 2 cut(s) 116, 240
Eco31I GGTCTC 2 cut(s) 230, 242
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 3 cut(s) 74, 92, 340
FaiI YATR 8 cut(s) 72, 90, 102, 132, 338, 357, 375, 384
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 2 cut(s) 384, 401
FatI CATG 3 cut(s) 70, 88, 336
FokI GGATG 1 cut(s) 198
FspBI CTAG 1 cut(s) 315
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 74, 92, 340
HinfI GANTC 3 cut(s) 232, 352, 408
HpaII CCGG 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 81, 216
Hpy188III TCNNGA 2 cut(s) 229, 369
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 3 cut(s) 31, 95, 240
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 3 cut(s) 74, 92, 340
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 274, 281
LpnPI CCDG 5 cut(s) 21, 298, 310, 383, 436
MaeI CTAG 1 cut(s) 315
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 4 cut(s) 133, 203, 257, 300
MluCI AATT 2 cut(s) 45, 114
MlyI GAGTC 1 cut(s) 402
MnlI CCTC 2 cut(s) 117, 120
MseI TTAA 3 cut(s) 57, 180, 442
MslI CAYNNNNRTG 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 297
NdeII GATC 1 cut(s) 259
NlaIII CATG 3 cut(s) 74, 92, 340
NlaIV GGNNCC 2 cut(s) 6, 283
NspI RCATGY 2 cut(s) 92, 340
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 2 cut(s) 232, 352
PinAI ACCGGT 1 cut(s) 296
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PscI ACATGT 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 6, 283
PspPI GGNCC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 57, 180, 442
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 402
SetI ASST 4 cut(s) 131, 162, 190, 254
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 45, 114
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 435
TasI AATT 2 cut(s) 45, 114
TfiI GAWTC 2 cut(s) 232, 352
Tru1I TTAA 3 cut(s) 57, 180, 442
Tru9I TTAA 3 cut(s) 57, 180, 442
TspDTI ATGAA 4 cut(s) 87, 153, 344, 428
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 45
XceI RCATGY 2 cut(s) 92, 340
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.