RchiOBHm_Chr6g0247311

Protein trichome birefringence-like 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018513
Physical Location & Seq
Forward (+)
3170848 .. 3171390
543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGTTTGTGGAGAAGAGACTGAAACCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCAGGTTGAGGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCAAGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCTTATTTTGGACATAACCCACTTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGACTTGCTCATAGCACAGTTAAATAATGTCCTGATTTAG

Protein Analysis

129

Amino Acids

14.54

Weight (kDa)

6.28

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 12 - 122 9.2e-34 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018513)

Species Orthologous Gene IDs
malus_domestica MD05G1110600.v1.1
rosa_chinensis RchiOBHm_Chr6g0247311
rosa_roxburghii Rroxscaffold_180G00433560
rosa_samantha Rh6AG039100 Rh6AG039300 Rh6AG040100 Rh6BG034600 Rh6CG034500 Rh6DG032200
rosa_wichuraiana Rw0G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 38
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 3 cut(s) 205, 216, 235
AgsI TTSAA 2 cut(s) 71, 154
AjnI CCWGG 2 cut(s) 25, 328
AleI CACNNNNGTG 1 cut(s) 252
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 48, 89
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 282, 286
BciT130I CCWGG 2 cut(s) 27, 330
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 27, 330
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 27, 330
BmsI GCATC 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 233, 271
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 216, 235
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 86, 323
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 27, 330
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 205, 216, 235
BseNI ACTGG 2 cut(s) 86, 323
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 3 cut(s) 205, 216, 235
BsmAI GTCTC 1 cut(s) 10
BsnI GGCC 1 cut(s) 209
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 2 cut(s) 86, 323
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 88
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 27, 330
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 8, 149
BstC8I GCNNGC 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 27, 330
BstSCI CCNGG 2 cut(s) 25, 328
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 48
CviJI RGCY 2 cut(s) 209, 287
CviKI_1 RGCY 2 cut(s) 209, 287
CviQI GTAC 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 8, 149
EarI CTCTTC 2 cut(s) 8, 149
Eco130I CCWWGG 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 25, 328
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 3 cut(s) 242, 314, 362
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 106
HinfI GANTC 2 cut(s) 183, 190
HpaII CCGG 1 cut(s) 106
HphI GGTGA 2 cut(s) 48, 89
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 187, 382
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 32, 284, 316
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 259
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 77, 101
MboII GAAGA 4 cut(s) 25, 136, 166, 307
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 4 cut(s) 68, 130, 169, 208
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 2 cut(s) 27, 330
MvaI CCWGG 2 cut(s) 27, 330
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 252
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 25, 328
PspGI CCWGG 2 cut(s) 25, 328
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 27, 330
SetI ASST 8 cut(s) 28, 61, 79, 94, 135, 201, 226, 289
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 212, 250
SmoI CTYRAG 2 cut(s) 212, 250
Sse9I AATT 1 cut(s) 38
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 25, 328
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 369
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 38
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.