Rh6CG034500

Protein trichome birefringence-like 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018513
Physical Location & Seq
Forward (+)
3193956 .. 3196165
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG034500.1

Sequence Viewer

Length: 1026 bp
ATGCGTCTCCCAAGTATGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCCGCAACAAATCCAACGGCCGTGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTCCCGCCGTTTGATCCTGCTAAGTTTCTTGAGATGTACAGAAACACCAGCATATTGTGCAGGGTTTATTGGTGATTCCTTGAACCGGAATATGTTTGTTTCGCTGTTCTGTTCGTTGAAAGGCGTGTCGAGTGAAGTAAAGAAGTGGCGGCCAGTTGGTGCTGATCGAGGGTTCACATTTCTTCAGTACAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCGGCCAATTCTAATGGTGACGTGCTGGAATCTCTTGGATATAAAGAGGGTTATAGAGTTGATGTTGACATTCCGGTTGACACATGGGCCGAATCGCTAAGCTTTCATGACATTCTGATCTTCAACACAGGTCACTGGTATTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTTTTTGAAAATGTTCAGCCTGTGGTTCCTCCTGTACTTCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTAGTGTTTGTGGAGAAGAGATTGAAGCCTGGTGCAATCAAATTCTTTCGTACTCAATCACCTAGACATTTTGAAGGAGGTGACTGGAACCAAGGTGGTTCTTGTAACCGGCAAAACCCTTTGTTGCCAGAGCAGGTTGAAGAACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCACGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGTGGGAAGAAGCACGATGATTGTATGCACTGGTGCTTGCCAGGAATAACAGATACTTGGAATGATTTGTTCATAGCACAGTTAAATAGTGTCAAATTTAGAACAAAATGA

Protein Analysis

341

Amino Acids

38.2

Weight (kDa)

8.98

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 62 - 331 5.7e-60 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018513)

Species Orthologous Gene IDs
malus_domestica MD05G1110600.v1.1
rosa_chinensis RchiOBHm_Chr6g0247311
rosa_roxburghii Rroxscaffold_180G00433560
rosa_samantha Rh6AG039100 Rh6AG039300 Rh6AG040100 Rh6BG034600 Rh6CG034500 Rh6DG032200
rosa_wichuraiana Rw0G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 2 cut(s) 34, 748
AccB7I CCANNNNNTGG 1 cut(s) 862
AciI CCGC 3 cut(s) 63, 127, 271
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 3 cut(s) 78, 272, 369
AcsI RAATTY 2 cut(s) 665, 1010
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 4 cut(s) 160, 311, 585, 676
AfiI CCNNNNNNNGG 6 cut(s) 207, 596, 607, 832, 843, 862
AgsI TTSAA 9 cut(s) 42, 205, 241, 490, 557, 649, 698, 764, 781
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 652, 955
AleI CACNNNNGTG 1 cut(s) 879
AluBI AGCT 2 cut(s) 468, 914
AluI AGCT 2 cut(s) 468, 914
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 130
AoxI GGCC 6 cut(s) 78, 272, 369, 453, 598, 834
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 2 cut(s) 665, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 453, 835
AsuHPI GGTGA 4 cut(s) 206, 395, 675, 716
BanII GRGCYC 1 cut(s) 514
BauI CACGAG 1 cut(s) 812
BbvI GCAGC 1 cut(s) 923
BccI CCATC 2 cut(s) 909, 913
BceAI ACGGC 3 cut(s) 65, 93, 114
BciT130I CCWGG 2 cut(s) 654, 957
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 909
BfuAI ACCTGC 2 cut(s) 34, 748
BglII AGATCT 1 cut(s) 35
BisI GCNGC 2 cut(s) 272, 912
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 2 cut(s) 273, 913
Bme1390I CCNGG 2 cut(s) 654, 957
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 453, 835
BmiI GGNNCC 3 cut(s) 513, 576, 713
BmrFI CCNGG 2 cut(s) 654, 957
BmsI GCATC 1 cut(s) 886
Bpu10I CCTNAGC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 2 cut(s) 172, 860
BsaBI GATNNNNATC 1 cut(s) 900
BsaJI CCNNGG 1 cut(s) 715
BsaWI WCCGGW 2 cut(s) 207, 439
Bsc4I CCNNNNNNNGG 6 cut(s) 207, 596, 607, 832, 843, 862
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 4 cut(s) 275, 506, 713, 950
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 2 cut(s) 654, 957
BseDI CCNNGG 1 cut(s) 715
BseGI GGATG 1 cut(s) 901
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 6 cut(s) 207, 596, 607, 832, 843, 862
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 4 cut(s) 275, 506, 713, 950
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 923
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 6 cut(s) 80, 274, 371, 455, 600, 836
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 208, 440, 733
BslI CCNNNNNNNGG 6 cut(s) 207, 596, 607, 832, 843, 862
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 6 cut(s) 80, 274, 371, 455, 600, 836
Bsp1286I GDGCHC 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 158
Bsp143I GATC 5 cut(s) 35, 120, 135, 286, 483
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 3 cut(s) 63, 127, 271
BspANI GGCC 6 cut(s) 80, 274, 371, 455, 600, 836
BspCNI CTCAG 1 cut(s) 870
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 513, 576, 713
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 2 cut(s) 34, 748
BspPI GGATC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 732
BsrGI TGTACA 1 cut(s) 158
BsrI ACTGG 4 cut(s) 275, 506, 713, 950
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 1 cut(s) 715
BssMI GATC 5 cut(s) 35, 120, 135, 286, 483
BssSI CACGAG 1 cut(s) 812
BssT1I CCWWGG 1 cut(s) 715
Bst2BI CACGAG 1 cut(s) 812
Bst2UI CCWGG 2 cut(s) 654, 957
Bst4CI ACNGT 3 cut(s) 118, 359, 996
Bst6I CTCTTC 2 cut(s) 635, 776
BstAPI GCANNNNNTGC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 324, 953
BstDEI CTNAG 4 cut(s) 110, 143, 464, 878
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 1 cut(s) 901
BstKTI GATC 5 cut(s) 38, 123, 138, 289, 486
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 5 cut(s) 35, 120, 135, 286, 483
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 53, 62, 179
BstNI CCWGG 2 cut(s) 654, 957
BstSCI CCNGG 2 cut(s) 652, 955
BstSFI CTRYAG 1 cut(s) 909
BstV1I GCAGC 1 cut(s) 923
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 6 cut(s) 80, 274, 371, 455, 600, 836
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 1 cut(s) 901
BtsIMutI CAGTG 3 cut(s) 114, 499, 943
BveI ACCTGC 2 cut(s) 34, 748
Cac8I GCNNGC 2 cut(s) 324, 953
CciI TCATGA 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 453, 835
Csp6I GTAC 4 cut(s) 159, 310, 584, 675
CviAII CATG 3 cut(s) 450, 473, 622
CviQI GTAC 4 cut(s) 159, 310, 584, 675
DdeI CTNAG 4 cut(s) 110, 143, 464, 878
DpnI GATC 5 cut(s) 37, 122, 137, 288, 485
DpnII GATC 5 cut(s) 35, 120, 135, 286, 483
EaeI YGGCCR 3 cut(s) 78, 272, 369
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 635, 776
EarI CTCTTC 2 cut(s) 635, 776
EclXI CGGCCG 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 715
Eco24I GRGCYC 1 cut(s) 514
Eco52I CGGCCG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 652, 955
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 715
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 453, 476, 625
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 3 cut(s) 449, 472, 621
FauI CCCGC 2 cut(s) 70, 134
Fnu4HI GCNGC 2 cut(s) 272, 912
FokI GGATG 1 cut(s) 888
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 2 cut(s) 272, 912
FspBI CTAG 1 cut(s) 687
GluI GCNGC 2 cut(s) 272, 912
HaeIII GGCC 6 cut(s) 80, 274, 371, 455, 600, 836
HapII CCGG 3 cut(s) 208, 440, 733
Hin1II CATG 3 cut(s) 453, 476, 625
HincII GTYRAC 2 cut(s) 433, 445
HindII GTYRAC 2 cut(s) 433, 445
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 5 cut(s) 197, 395, 458, 810, 817
HpaII CCGG 3 cut(s) 208, 440, 733
HphI GGTGA 4 cut(s) 206, 395, 675, 716
Hpy166II GTNNAC 4 cut(s) 85, 297, 433, 445
Hpy188I TCNGA 3 cut(s) 336, 483, 890
Hpy188III TCNNGA 4 cut(s) 151, 473, 590, 814
Hpy8I GTNNAC 4 cut(s) 85, 297, 433, 445
HpyAV CCTTC 1 cut(s) 692
HpyCH4III ACNGT 3 cut(s) 118, 359, 996
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 7 cut(s) 29, 56, 182, 518, 659, 911, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 62, 179
HpyF3I CTNAG 4 cut(s) 110, 143, 464, 878
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 3 cut(s) 453, 476, 625
Kzo9I GATC 5 cut(s) 35, 120, 135, 286, 483
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 923
LweI GCATC 1 cut(s) 886
MaeI CTAG 1 cut(s) 687
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 6 cut(s) 316, 353, 383, 497, 704, 728
MalI GATC 5 cut(s) 37, 122, 137, 288, 485
MboI GATC 5 cut(s) 35, 120, 135, 286, 483
MboII GAAGA 8 cut(s) 30, 296, 478, 652, 763, 776, 793, 934
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 4 cut(s) 51, 373, 665, 1010
MlyI GAGTC 1 cut(s) 804
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 8 cut(s) 92, 284, 406, 588, 611, 695, 796, 835
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 1 cut(s) 998
MslI CAYNNNNRTG 2 cut(s) 626, 879
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 3 cut(s) 208, 440, 733
MspR9I CCNGG 2 cut(s) 654, 957
MvaI CCWGG 2 cut(s) 654, 957
MwoI GCNNNNNNNGC 3 cut(s) 53, 62, 179
NdeII GATC 5 cut(s) 35, 120, 135, 286, 483
NlaIII CATG 3 cut(s) 453, 476, 625
NlaIV GGNNCC 3 cut(s) 513, 576, 713
NmuCI GTSAC 3 cut(s) 383, 497, 704
OliI CACNNNNGTG 1 cut(s) 879
PagI TCATGA 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 4 cut(s) 197, 395, 458, 817
PflMI CCANNNNNTGG 1 cut(s) 862
PkrI GCNGC 2 cut(s) 273, 913
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
Psp6I CCWGG 2 cut(s) 652, 955
PspGI CCWGG 2 cut(s) 652, 955
PspN4I GGNNCC 3 cut(s) 513, 576, 713
PspPI GGNCC 2 cut(s) 453, 835
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 4 cut(s) 160, 311, 585, 676
RsaNI GTAC 4 cut(s) 159, 310, 584, 675
RseI CAYNNNNRTG 2 cut(s) 626, 879
SaqAI TTAA 1 cut(s) 998
SatI GCNGC 2 cut(s) 272, 912
Sau3AI GATC 5 cut(s) 35, 120, 135, 286, 483
Sau96I GGNCC 2 cut(s) 453, 835
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 2 cut(s) 654, 957
SduI GDGCHC 1 cut(s) 514
SfaNI GCATC 1 cut(s) 886
SfcI CTRYAG 1 cut(s) 909
SmiMI CAYNNNNRTG 2 cut(s) 626, 879
SmlI CTYRAG 2 cut(s) 151, 839
SmoI CTYRAG 2 cut(s) 151, 839
Sse9I AATT 4 cut(s) 51, 373, 665, 1010
SsiI CCGC 3 cut(s) 63, 127, 271
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 652, 955
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 3 cut(s) 118, 359, 996
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 251, 289, 603
TasI AATT 4 cut(s) 51, 373, 665, 1010
TatI WGTACW 3 cut(s) 158, 309, 583
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 4 cut(s) 197, 395, 458, 817
Tru1I TTAA 1 cut(s) 998
Tru9I TTAA 1 cut(s) 998
TscAI CASTG 3 cut(s) 121, 506, 950
TseFI GTSAC 3 cut(s) 383, 497, 704
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 3 cut(s) 383, 497, 704
TspDTI ATGAA 4 cut(s) 461, 548, 629, 976
TspRI CASTG 3 cut(s) 121, 506, 950
Van91I CCANNNNNTGG 1 cut(s) 862
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 2 cut(s) 665, 1010
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.