Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00926

Orthogroup ID

OG0018513

Physical Location & Seq

Genomic Coordinates Reverse (-)

42381 .. 44098

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTTTGTTTCGCTTATAATGTTACGCTTGCGTATCATCGGACAAATCTTTTGGCTCGTTACGGTAGGTGGTCAGCCAATTCTAATGGTAGCGTGCTGGAATCTCTTGGATATAAAGAGGGGTATAGAGTTAATGTTGACACTCCGGTTGACACATGGGCCGAATCTCTAAGCTTTCATGACATTCTGATATTCAACACAGGGCATTGGTGGTGGGCTCCTGCAAAGTTTGACCCTATGAAGTCGCCTTTGCTTTTCTTTGAAAATGATCAGCCTGTGGTTCCTCCAGTACATCCTGATGTTGGCCTCGATATGGTTATGAAACACATGGTTGAGGTACTCTTCTCATTGAAGAATAATGGAACAAATGTAGAGGCAAGACTCGTGAATCAACACCTTTACAAGGCCCTTGAGGGGTCAGGTTTCCATATTTTGGACATAACCCACCTGAGTGAGTTCAGAGCAGATGCCCATCCATCTGCAGCTGGCGGGAAGAAGCACGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

169

Amino Acids

19.14

Weight (kDa)

6.18

Isoelectric Point (pI)

16.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	5 - 120	7.7e-11	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018513)

Species	Orthologous Gene IDs
malus_domestica	MD05G1110600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0247311
rosa_roxburghii	Rroxscaffold_180G00433560
rosa_samantha	Rh6AG039100 Rh6AG039300 Rh6AG040100 Rh6BG034600 Rh6CG034500 Rh6DG032200
rosa_wichuraiana	Rw0G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	433
AciI	CCGC	1 cut(s)	489
AfaI	GTAC	2 cut(s)	291, 339
AfiI	CCNNNNNNNGG	5 cut(s)	302, 313, 403, 414, 433
AgsI	TTSAA	3 cut(s)	196, 263, 352
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	2 cut(s)	174, 485
AluI	AGCT	2 cut(s)	174, 485
AoxI	GGCC	3 cut(s)	159, 304, 405
ApeKI	GCWGC	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspS9I	GGNCC	2 cut(s)	159, 406
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	480, 484
BclI	TGATCA	1 cut(s)	268
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	159, 406
BmiI	GGNNCC	2 cut(s)	219, 282
BmsI	GCATC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	5 cut(s)	302, 313, 403, 414, 433
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	471
BseGI	GGATG	2 cut(s)	292, 472
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	5 cut(s)	302, 313, 403, 414, 433
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	3 cut(s)	161, 306, 407
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	5 cut(s)	302, 313, 403, 414, 433
BsnI	GGCC	3 cut(s)	161, 306, 407
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	3 cut(s)	161, 306, 407
BspCNI	CTCAG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	219, 282
BspMAI	CTGCAG	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	30, 95, 487
BstDEI	CTNAG	2 cut(s)	170, 449
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	292, 472
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	161, 306, 407
BtsCI	GGATG	2 cut(s)	292, 472
Cac8I	GCNNGC	3 cut(s)	30, 95, 487
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	159, 406
Csp6I	GTAC	2 cut(s)	290, 338
CviAII	CATG	3 cut(s)	156, 179, 328
CviJI	RGCY	9 cut(s)	56, 77, 161, 174, 218, 274, 306, 407, 485
CviKI_1	RGCY	9 cut(s)	56, 77, 161, 174, 218, 274, 306, 407, 485
CviQI	GTAC	2 cut(s)	290, 338
DdeI	CTNAG	2 cut(s)	170, 449
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	3 cut(s)	159, 182, 331
FatI	CATG	3 cut(s)	155, 178, 327
FauI	CCCGC	1 cut(s)	482
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	2 cut(s)	279, 459
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	161, 306, 407
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	3 cut(s)	159, 182, 331
HincII	GTYRAC	2 cut(s)	139, 151
HindII	GTYRAC	2 cut(s)	139, 151
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	4 cut(s)	101, 164, 381, 388
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	139, 151
Hpy188I	TCNGA	3 cut(s)	42, 189, 461
Hpy188III	TCNNGA	3 cut(s)	179, 296, 385
Hpy8I	GTNNAC	2 cut(s)	139, 151
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	224, 482
HpyF3I	CTNAG	2 cut(s)	170, 449
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	159, 182, 331
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	457
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	22, 59
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	334, 364, 505
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	6 cut(s)	112, 294, 317, 328, 367, 406
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	297, 450
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	159, 182, 331
NlaIV	GGNNCC	2 cut(s)	219, 282
OliI	CACNNNNGTG	1 cut(s)	450
PagI	TCATGA	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	101, 164, 388
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	219, 282
PspPI	GGNCC	2 cut(s)	159, 406
PstI	CTGCAG	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	291, 339
RsaNI	GTAC	2 cut(s)	290, 338
RseI	CAYNNNNRTG	2 cut(s)	297, 450
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	159, 406
SchI	GAGTC	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	71, 176, 339, 399, 424, 450, 487, 504
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	297, 450
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	309
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	101, 164, 388
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	167, 254, 335
Van91I	CCANNNNNTGG	1 cut(s)	433
XagI	CCTNNNNNAGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.